friendsofstrandseq / mosaicatcher-pipelineLinks
Integrated workflow for SV calling from single-cell Strand-seq data
☆24Updated 7 months ago
Alternatives and similar repositories for mosaicatcher-pipeline
Users that are interested in mosaicatcher-pipeline are comparing it to the libraries listed below
Sorting:
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated 3 weeks ago
- ☆14Updated 5 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- ☆17Updated last year
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆16Updated 7 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated 3 weeks ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- ☆23Updated 4 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Filter and prioritize fusion calls☆20Updated last year
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- ☆18Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Transcriptome-wide network☆16Updated 6 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated 2 years ago
- Visualization tool for temporal clonal evolution.☆17Updated 5 years ago
- Workflow for Sequenza, cellularity and ploidy☆22Updated 2 months ago
- DriverPower☆26Updated 9 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆40Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 7 months ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆18Updated 2 years ago
- ☆33Updated 10 months ago