Alternatives and similar repositories for mosaicatcher-pipeline

Users that are interested in mosaicatcher-pipeline are comparing it to the libraries listed below

• flemingtonlab / SpliceTools
  ☆17Updated last year
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 9 months ago
• mskilab-org / nf-jabba
  ☆13Updated last month
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆43Updated 3 years ago
• battle-lab / twn_tsn
  Transcriptome-wide network
  ☆16Updated 5 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆18Updated this week
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 4 months ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 6 months ago
• PoisonAlien / somaticfreq
  knowledge-based genotyping of cancer hotspots from the tumor BAM files
  ☆21Updated 3 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated last month
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆35Updated last year
• Xinglab / rMATS-long
  ☆28Updated 7 months ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆35Updated 2 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆19Updated last month
• MarioniLab / sarlacc
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆13Updated 6 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆18Updated last year
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 7 years ago
• qqwang-berkeley / JUM
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆28Updated 2 years ago
• parklab / MSIprofiler
  Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data
  ☆20Updated last year
• jrflab / modules
  MSKCC Reis-Filho Lab pipeline thingy
  ☆17Updated 2 months ago
• parklab / SCAN2
  SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
  ☆14Updated last month
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆22Updated last year
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆34Updated 7 months ago
• mrcuizhe / interacCircos
  An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot
  ☆28Updated 2 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 5 years ago