Assembly chloroplast genome and validate conformation
☆15May 21, 2024Updated last year
Alternatives and similar repositories for novowrap
Users that are interested in novowrap are comparing it to the libraries listed below
Sorting:
- a toolbox for utilize organelle genomic data☆25Aug 7, 2025Updated 7 months ago
- chloroplast genome assembly using long reads data☆15Jul 8, 2025Updated 8 months ago
- A R tool to parse and visualize chloroplast genomes☆12Dec 1, 2021Updated 4 years ago
- Plastid Genome Annotator☆54Oct 29, 2020Updated 5 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- ☆15Mar 20, 2023Updated 3 years ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Feb 26, 2026Updated 3 weeks ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Jun 17, 2023Updated 2 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆373Feb 13, 2025Updated last year
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated 7 months ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Apr 14, 2023Updated 2 years ago
- C program for selecting DNA substitution models using PAUP*☆18Mar 24, 2020Updated 5 years ago
- Automated de novo assembly of whole chloroplast genomes.☆48Sep 23, 2024Updated last year
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- A mitogenome toolkit inspired by MitoZ, while being more effective, precise and flexible.☆20May 10, 2023Updated 2 years ago
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 4 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆51May 4, 2025Updated 10 months ago
- Reconstruct Ancestral State in Phylogenies☆27May 21, 2024Updated last year
- ☆15Dec 20, 2022Updated 3 years ago
- ☆21Dec 30, 2025Updated 2 months ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆40Mar 1, 2026Updated 3 weeks ago
- 使用SSM（SpringMVC Spring Mybatis）创建的注册登录系统。验证码使用jcaptcha，发送邮件使用JEmail☆13Dec 14, 2017Updated 8 years ago
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 4 years ago
- A Python API and a command-line tool for the Tree of Life☆17Aug 28, 2020Updated 5 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40May 21, 2020Updated 5 years ago
- Combining de novo and reference-guided assembly with Scaffold_builder☆20Oct 8, 2021Updated 4 years ago
- Taxonomy-aware DNA sequence processing toolkit☆33Feb 23, 2026Updated last month
- The Dinucleotide Quantification Python Package☆11Mar 12, 2022Updated 4 years ago
- 16S pipeline using qiime2 created with snakemake☆12Jan 2, 2026Updated 2 months ago
- ☆22Mar 12, 2026Updated last week
- The repository is dedicated to Evasion Generative Adversarial Network source code.☆16Jun 9, 2022Updated 3 years ago
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 2 months ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- Phylogenetic penalized likelihood☆54Jun 27, 2025Updated 8 months ago