spyros-lytras / dinuq
The Dinucleotide Quantification Python Package
☆11Updated 2 years ago
Alternatives and similar repositories for dinuq:
Users that are interested in dinuq are comparing it to the libraries listed below
- ☆26Updated 4 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Bioinformatics scripts☆13Updated last month
- ☆12Updated 5 years ago
- A selection of short scripts for analyzing microbial genomes☆14Updated 6 years ago
- Influenza genome analysis Nextflow workflow☆26Updated last month
- ☆24Updated 8 months ago
- phylogenetic analyses informed by deep mutational scanning data☆14Updated 8 months ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated 10 months ago
- Protein Alignment and Detection Interface☆61Updated 10 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Metagenome analysis using the Kraken software suite☆30Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- ☆26Updated 4 years ago
- Metagenomics workshop at Scripps Institute of Oceanography☆8Updated 8 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆32Updated 7 months ago
- Latest MOCAT2 version☆19Updated 3 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- ☆27Updated 4 years ago
- Combining de novo and reference-guided assembly with Scaffold_builder☆19Updated 3 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 7 months ago
- A program for divvying or partially filtering multiple sequence alignments☆24Updated 5 years ago
- MIRA sequence assembler☆28Updated last month
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated 8 months ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆20Updated 6 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆32Updated last month
- Documentation for Evolview☆26Updated 3 years ago
- The Zika bioinformatics pipeline☆35Updated 4 years ago
- Code for detecting genomic island insertions in clades of microbes.☆19Updated last year