eelhaik / PCA_critique
☆13Updated 2 years ago
Alternatives and similar repositories for PCA_critique:
Users that are interested in PCA_critique are comparing it to the libraries listed below
- Calculate distances between phylogenetic trees in R☆32Updated last month
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Updated 4 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 6 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆54Updated 9 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆14Updated 2 years ago
- Phylogenetic inference using Stan☆24Updated 3 weeks ago
- snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.☆19Updated last year
- genotype dimensionality reduction with a VAE☆44Updated 3 weeks ago
- R package for fitting high-dimensional multivariate linear mixed effect models☆37Updated 6 months ago
- Differential analysis of multi-omics data based on the Tweedie distribution☆28Updated 7 months ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆48Updated last month
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- ☆20Updated 3 months ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 5 years ago
- R package to model and simulate admixed populations☆8Updated last year
- Genetics training camp☆21Updated 4 years ago
- Tutorial on Bayesian phylogenetic analysis☆46Updated 7 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 4 years ago
- The Ross-Ibarra's lab documentation☆26Updated 2 years ago
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆28Updated this week
- The official Inferelator repository maintained by current or former Bonneau lab members☆9Updated 7 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆16Updated 8 months ago
- Large scale ancestry inference from PCA data☆21Updated last year
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆14Updated last year
- Implementation of the treeSeg algorithm as an R package.☆14Updated 3 years ago
- genetic correlation between phenotypes in the UK biobank☆12Updated last year
- ☆10Updated 4 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 4 years ago