eelhaik / PCA_critiqueLinks
☆15Updated 2 years ago
Alternatives and similar repositories for PCA_critique
Users that are interested in PCA_critique are comparing it to the libraries listed below
Sorting:
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆16Updated last year
- A unified array job submitter for LSF, SGE/UGE and Slurm☆32Updated 9 months ago
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆51Updated last year
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 4 years ago
- ☆11Updated 2 years ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆12Updated 2 years ago
- run-length BWT tools for genomic sequences☆19Updated 3 years ago
- Calculate distances between phylogenetic trees in R☆32Updated last week
- [mu]tation [s]pectrum [h]istory [i]nference☆26Updated 7 months ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆14Updated 3 years ago
- Reference genome quality scores☆21Updated 4 years ago
- GPU accelerated GWAS framework based on TensorFlow☆34Updated 2 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆17Updated 8 months ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆52Updated 4 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Updated 6 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated 2 years ago
- A book for my course☆17Updated 9 months ago
- ☆25Updated last month
- A library and tool for accessing remote BLOW5 files.☆24Updated 10 months ago
- SNP genotyping in polyploids☆17Updated 5 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 8 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 8 months ago
- An R package to detect selection in biological pathways☆14Updated last year
- ☆19Updated last year
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Updated last year
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆15Updated 3 years ago
- Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"☆13Updated 6 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 weeks ago