ismms-himc / visium-clustergrammer2
Spatial Transcriptomics Dashboard
☆28Updated last year
Related projects ⓘ
Alternatives and complementary repositories for visium-clustergrammer2
- Analyzing cellular niches in spatial transcriptomics data☆27Updated 5 months ago
- Single-cell exploratory data analysis for RNA-Seq☆39Updated 3 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆35Updated last year
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated last year
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆21Updated last month
- Fit generalized linear models in python.☆27Updated last year
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆53Updated 3 weeks ago
- Multi-omics studies are available here☆50Updated 2 years ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated 11 months ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 2 years ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆45Updated this week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆49Updated 5 months ago
- Multi-omics factor analysis v2☆35Updated 2 weeks ago
- A Python package for gene network analysis☆32Updated 2 years ago
- Use cases for anndata.☆13Updated last month
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Updated 4 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated last month
- User-submitted RNA-seq data analysis tools for BioJupies.☆19Updated 3 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆53Updated last month
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Updated last year
- Python client for the OmniPath web service☆39Updated 4 months ago
- scRNAseq integration with triplet neural networks☆39Updated last year
- Work with trained factor models in Python☆30Updated 2 weeks ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆69Updated 3 months ago
- Code and documentation for the curation of cellxgene datasets☆38Updated this week
- Multiview Intercellular SpaTial modeling framework☆48Updated 7 months ago
- MultiMAP for integration of single cell multi-omics☆53Updated 11 months ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- ☆20Updated 2 years ago