ismms-himc / visium-clustergrammer2Links
Spatial Transcriptomics Dashboard
☆27Updated 2 years ago
Alternatives and similar repositories for visium-clustergrammer2
Users that are interested in visium-clustergrammer2 are comparing it to the libraries listed below
Sorting:
- Multi-omics studies are available here☆52Updated 3 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Use cases for anndata.☆14Updated 3 months ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 2 months ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Analyzing cellular niches in spatial transcriptomics data☆30Updated 9 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 4 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆20Updated 2 years ago
- ☆22Updated 3 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- ☆12Updated last year
- Single cell interactive plotting tools☆23Updated 5 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last year
- Code and documentation for the curation of cellxgene datasets☆50Updated this week
- Automated cell filtering for single-cell RNA sequencing data☆25Updated last year
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Updated last year
- A performant scientific image visualization system.☆36Updated last month
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Updated 5 years ago
- Create PyTorch Datasets from AnnData☆21Updated 6 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Updated 2 months ago
- ☆37Updated 2 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated last year
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated last month