Spatial Transcriptomics Dashboard
☆27Jul 6, 2023Updated 3 years ago
Alternatives and similar repositories for visium-clustergrammer2
Users that are interested in visium-clustergrammer2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 3 years ago
- "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.☆120Dec 30, 2022Updated 3 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆22Jul 22, 2025Updated last year
- JavaScript-based pathway viewer and editor☆38Feb 20, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Matlab implementation of the Elastic Principal Graphs (ElPiGraph) method☆14Dec 6, 2022Updated 3 years ago
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆269Updated this week
- Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format☆38Jan 10, 2025Updated last year
- Data Standards Hackathon for NGS based typing.☆14Aug 11, 2026Updated last month
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- Create a clustergram visualization from a user defined network in tsv format.☆13May 1, 2023Updated 3 years ago
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆14Sep 8, 2026Updated 2 weeks ago
- ☆12Mar 22, 2023Updated 3 years ago
- scNMT-seq gastrulation☆44Feb 8, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tool to create images and configuration files for Minerva-Story☆16Updated this week
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆12Mar 10, 2022Updated 4 years ago
- A very fast cloud-native static spatial index for 2D points based on a Z-Order space filling curve and BIGMIN search space pruning☆12May 16, 2025Updated last year
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 5 years ago
- Anomaly Screening Applying Pseudowells (ASAP). FORCE Hackathon, Stavanger 18-19 September 2018.☆10Jan 11, 2019Updated 7 years ago
- 2D image registration in python, using napari.☆16Dec 7, 2021Updated 4 years ago
- Deep Learning Library for Spot Detection☆24Jun 4, 2026Updated 3 months ago
- single cell sequencing analysis tutorial☆18Jan 15, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python package to perform normalization and variance-stabilization of single-cell data☆29Jul 17, 2025Updated last year
- domain adaptation of spatial and single-cell transcriptome☆28Sep 21, 2024Updated 2 years ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 3 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- Quantifying experimental perturbations at single cell resolution☆118Sep 27, 2024Updated 2 years ago
- Data for Coordination Complexes for the InChI Identifier☆12May 11, 2021Updated 5 years ago
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- SCREW: A Reproducible Workflow for Single-Cell Epigenomics☆11Oct 22, 2017Updated 8 years ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆76Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆10Dec 14, 2016Updated 9 years ago
- scDissector is an exploratory data analysis tool for clustered single-cell RNA-seq data. The tool has been developed and implemented as R…☆20Jul 21, 2023Updated 3 years ago
- A Demultiplexing Tool for Illumina Sequencers☆10Sep 27, 2016Updated 10 years ago
- Python client interface for EBRAINS Collaboratory Drive (Seafile) and Bucket (data-proxy) storage☆13May 25, 2026Updated 4 months ago
- JavaScript matrix visualization and analysis☆69Aug 1, 2024Updated 2 years ago
- 2019 single cell RNA sequencing Workshop @ UCD AND UCSF☆17Nov 25, 2019Updated 6 years ago
- ☆15Aug 13, 2023Updated 3 years ago