Single-cell genomic sequencing of the human gut microbiome
☆13Jun 12, 2024Updated 2 years ago
Alternatives and similar repositories for Microbe-seq
Users that are interested in Microbe-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 11 months ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 5 years ago
- DeepSeek Harness 插件:用 JSON 规格生成可验证的架构图、流程图、时序图、数据流图与生命周期图(移植自 tt-a1i/archify)☆22Aug 15, 2026Updated 2 months ago
- ☆17Mar 18, 2026Updated 7 months ago
- Code repository accompanying the manuscript, Symbiont loss and gain, rather than co-diversification shapes honeybee gut microbiota divers…☆15Feb 21, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆11Oct 23, 2024Updated 2 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- Fully automatic k-mer based polishing for genome assemblies. Based on original concept and design from Ivan Sovic, Ann McCartney, and Ara…☆11Mar 16, 2026Updated 7 months ago
- R package for Maximal Information-Based Nonparametric Exploration computation☆11Jun 15, 2021Updated 5 years ago
- A deep learning method for the prediction of phage-bacteria interactions based on key genes☆10Dec 16, 2024Updated last year
- ☆11Sep 10, 2024Updated 2 years ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 10 months ago
- ☆14Sep 5, 2026Updated 2 months ago
- A Port of SparCC by Yonatan Friedman to Python3☆17Feb 14, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- My thoughts and examples on DuckDB and R☆14May 31, 2022Updated 4 years ago
- DeepCNV: A Deep Learning Approach for Authenticating Copy Number Variants☆10Feb 20, 2023Updated 3 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆43Oct 15, 2025Updated last year
- The Ribosomal Operon Database (ROD)☆13Apr 2, 2025Updated last year
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- anTraX: high throughput tracking of color-tagged insects☆18Feb 23, 2024Updated 2 years ago
- Feature Frequency Profile(FFP) two core programs☆13Sep 29, 2026Updated last month
- Suite for phased clusters discovery, comparison, annotation and to identify miRNA triggers - uses MapReduce model [In review]☆10Oct 9, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Matlab implementation for fruit detection in 3D point clouds acquired with LiDAR sensor Velodyne VLP-16☆14Oct 16, 2024Updated 2 years ago
- A tool to infer TF regulators for gene modules.☆11May 11, 2021Updated 5 years ago
- Usage Heatmap for Shiny with heatmap.js☆24Jan 25, 2025Updated last year
- Identify non-B forming motifs☆15Jun 22, 2026Updated 4 months ago
- Richer Convolutional Features for Edge Detection model in pytorch CVPR2017☆10Dec 23, 2021Updated 4 years ago
- Statistical inference of growth-based deep mutational scanning (DMS) screens☆11Feb 27, 2026Updated 8 months ago
- The materials for the Deep Learning in Biology workshop put on by Alex Lee, David Nicholson, and Ben Heil☆13Oct 30, 2020Updated 6 years ago
- Deep Learning method for novel virus detection in sequencing data☆10Mar 19, 2025Updated last year
- Identification of viral RdRPs in single-cell RNA sequencing data☆15Mar 12, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- pyprefixspan - Python implementation for the algorithm PrefixSpan (Prefix-projected Sequential Pattern mining).☆11Jan 26, 2018Updated 8 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- CellReasoner: A reasoning-enhanced large language model for cell type annotation☆10Oct 1, 2025Updated last year
- Resources for the Col-CEN reference genome assemblies☆12Feb 15, 2022Updated 4 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)☆14Dec 7, 2016Updated 9 years ago
- Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their ori…☆18Oct 10, 2025Updated last year