ncrna / PathogenTrackLinks
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
☆28Updated 2 years ago
Alternatives and similar repositories for PathogenTrack
Users that are interested in PathogenTrack are comparing it to the libraries listed below
Sorting:
- A continually expanding collection of RNA-seq tools☆51Updated 11 months ago
- An R interface to the MEME Suite☆52Updated 3 months ago
- Bayesian network plot for the enrichment analysis results☆65Updated 11 months ago
- documentation for trackViewer☆29Updated 6 years ago
- ☆62Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Motif manipulation functions for R.☆30Updated 4 months ago
- Workshop • Analysis of RNA-seq data☆36Updated last year
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- 🧬 Gene analysis toolkit based on R☆57Updated 8 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- Tutorial Website☆59Updated 4 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆12Updated 3 years ago
- Time-Course Multi-Omics data integration☆25Updated last year
- ☆47Updated 8 months ago
- direct comparison of circular and linear RNA expression☆22Updated 4 years ago
- Transcriptomics Visualization R package.☆74Updated 5 months ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 9 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆17Updated last week
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Differential Gene Correlation Analysis☆45Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 2 months ago