ncrna / PathogenTrackLinks
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
☆28Updated 2 years ago
Alternatives and similar repositories for PathogenTrack
Users that are interested in PathogenTrack are comparing it to the libraries listed below
Sorting:
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- 🧬 Gene analysis toolkit based on R☆61Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated last week
- Bayesian network plot for the enrichment analysis results☆66Updated last year
- ☆62Updated 5 years ago
- A continually expanding collection of RNA-seq tools☆53Updated 3 months ago
- Transcriptomics Visualization R package.☆76Updated 9 months ago
- Time-Course Multi-Omics data integration☆26Updated last year
- documentation for trackViewer☆29Updated 6 years ago
- Workshop • Analysis of RNA-seq data☆37Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Tutorial Website☆63Updated 4 years ago
- Motif manipulation functions for R.☆30Updated 3 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 3 months ago
- This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for singl…☆18Updated 4 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 9 months ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated last year
- ☆48Updated last year
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Updated 8 years ago
- ☆34Updated 2 months ago
- ☆29Updated 2 years ago
- circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line dri…☆31Updated 2 years ago
- Differential Gene Correlation Analysis☆46Updated last year
- MeRIPseqPipe:An integrated analysis pipeline for MeRIP-seq data based on Nextflow.☆43Updated last year
- binned motif enrichment analysis and visualisation☆44Updated 2 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- An R interface to the MEME Suite☆54Updated 2 weeks ago