AI-sandbox / archetypal-analysis

Related projects ⓘ

Alternatives and complementary repositories for archetypal-analysis

• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆28Updated last year
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆11Updated last month
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆17Updated 5 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆26Updated 3 months ago
• thamala / PBScan
  Selection outlier scan with population branch statistic
  ☆13Updated 9 months ago
• yiliao1022 / LASTZ_SV_pipeline
  ☆16Updated 5 years ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆19Updated this week
• jessicawleigh / popart
  General purpose population genetics software
  ☆12Updated 5 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆36Updated last year
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆19Updated 4 years ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆29Updated 3 years ago
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆15Updated 4 years ago
• ComparativeGenomicsToolkit / neutral-model-estimator
  Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit
  ☆11Updated 4 years ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated last month
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆24Updated 4 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆21Updated last year
• wheatgenetics / owwc
  repository for code used in analysis of open wild wheat consortium
  ☆15Updated 3 years ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 5 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 2 years ago
• Popgen48 / scalepopgen
  ☆19Updated 7 months ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆23Updated 5 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 weeks ago
• yilinZhang-bio / Watermelon-pangenome
  ☆20Updated last year
• evodify / genotype-files-manipulations
  Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.
  ☆10Updated 3 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• jaredgk / PPP
  Repository for pipeline code
  ☆24Updated 8 months ago
• c-zhou / polyGembler
  ☆15Updated 2 years ago
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆13Updated 5 months ago
• LAILAB-CAU / update-Mo17
  ☆22Updated last year