A collection of functions for working with DNA methylation microarrays (quality control, pre-processing, LC estimation, ...)
☆27Jul 28, 2025Updated 7 months ago
Alternatives and similar repositories for ewastools
Users that are interested in ewastools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Supplementary Code for "Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex"☆13Oct 27, 2015Updated 10 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 3 years ago
- Deep Treatment Learning (R)☆17Nov 9, 2022Updated 3 years ago
- A 450k tutorial in the form of an R package☆12Jul 5, 2016Updated 9 years ago
- A cross-package Bioconductor workflow for analysing methylation array data☆11Mar 31, 2017Updated 8 years ago
- Code to implement the DunedinPACE scoring algorithm in Illumina 450k or EPIC array data☆47Jun 6, 2025Updated 9 months ago
- ☆20Feb 17, 2021Updated 5 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆55Mar 12, 2026Updated last week
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆19Feb 16, 2026Updated last month
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 2 years ago
- Modelling DNA methylation profiles☆24Jul 16, 2020Updated 5 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Oct 2, 2014Updated 11 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Nov 26, 2025Updated 3 months ago
- ☆24Jun 27, 2022Updated 3 years ago
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆47Mar 18, 2022Updated 4 years ago
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆13Feb 14, 2024Updated 2 years ago
- A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set☆18Feb 12, 2016Updated 10 years ago
- 🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips☆81Feb 6, 2026Updated last month
- ☆14Mar 8, 2024Updated 2 years ago
- Default Bayesian hypothesis tests for correlation, partial correlation, and mediation☆11May 4, 2020Updated 5 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- TopoWx ("Topography Weather") is an open source framework written in Python and R for interpolating temperature observations at a topocli…☆22Jul 10, 2017Updated 8 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆51Jul 6, 2023Updated 2 years ago
- Rewrite of gWidgets☆35Jan 16, 2021Updated 5 years ago
- Convenience functions for doing spatial calculations on data.tables☆32May 15, 2018Updated 7 years ago
- hazard and excess hazard modelling with multidimensional penalized splines☆12Dec 2, 2024Updated last year
- Deep learning in genomics☆20Jan 26, 2019Updated 7 years ago
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆12Dec 12, 2022Updated 3 years ago
- A multi-country analysis of the short-term mortality risks of sulphur dioxide☆12Feb 13, 2025Updated last year
- ☆13Nov 1, 2020Updated 5 years ago
- A 10x faster version base on official trimmomatic. The results of trimmomatic-pigz are exactly the same with official trimmomatic.☆16Nov 20, 2024Updated last year
- An R for fast and flexible DNA methylation analysis☆35Dec 9, 2025Updated 3 months ago
- Create Regional Association Plots☆13Sep 7, 2025Updated 6 months ago
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆27Jun 5, 2018Updated 7 years ago
- An R package for generalised survival models☆28Aug 27, 2025Updated 6 months ago
- ☆13Jun 24, 2019Updated 6 years ago
- Epigenomic enrichment analysis of age-related genomic regions☆17Nov 2, 2018Updated 7 years ago
- R code to work with the NIH RePORTER API☆11Feb 11, 2026Updated last month
- ☆14Mar 6, 2026Updated 2 weeks ago