Alternatives and similar repositories for containers

Users that are interested in containers are comparing it to the libraries listed below

• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆30Updated last year
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆30Updated last week
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆32Updated last year
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆41Updated 2 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• tobyjohnson / gtx
  Genetics ToolboX R package
  ☆32Updated 5 years ago
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated last year
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆46Updated 2 years ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆31Updated last year
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆22Updated last year
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆41Updated 7 years ago
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆26Updated 4 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆34Updated 5 years ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 3 months ago
• kjgleason / Primo
  Primo
  ☆16Updated 4 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆35Updated 4 months ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆37Updated last year
• bogdanlab / fizi
  Leveraging functional information to improve GWAS summary statistic imputation
  ☆19Updated 4 years ago
• borangao / MESuSiE
  ☆20Updated 2 months ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 3 years ago
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆52Updated last week
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆18Updated 7 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 4 months ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆56Updated 3 years ago
• cuelee / pleio
  ☆19Updated 2 months ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆20Updated 2 months ago