Alternatives and similar repositories for containers:

Users that are interested in containers are comparing it to the libraries listed below

• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆26Updated 8 months ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated 9 months ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆26Updated 3 months ago
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆35Updated 2 weeks ago
• cumc / pecotmr
  Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆20Updated this week
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆46Updated 3 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆22Updated this week
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆18Updated last year
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆48Updated 2 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆29Updated last year
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆54Updated 3 months ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆41Updated 6 years ago
• yanglab-emory / TIGAR
  ☆21Updated 2 months ago
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆21Updated 5 months ago
• jrs95 / gassocplot
  Regional association plots
  ☆25Updated 9 months ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆16Updated 10 months ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆14Updated 3 years ago
• omerwe / S-PCGC
  Heritability, genetic correlation and functional enrichment estimation for case-control studies
  ☆18Updated last year
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆23Updated 3 years ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆26Updated 8 months ago
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆37Updated 3 years ago
• clagiamba / moloc
  ☆34Updated 4 years ago
• cuelee / pleio
  ☆18Updated 10 months ago
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆18Updated 2 years ago
• Stahl-Lab-MSSM / coloc2
  Upgrade to coloc
  ☆13Updated 6 years ago