Alternatives and similar repositories for 2021_IBG_Hail:

Users that are interested in 2021_IBG_Hail are comparing it to the libraries listed below

• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆18Updated 2 years ago
• clagiamba / moloc
  ☆34Updated 3 years ago
• marcoralab / MRcovid
  ☆11Updated 2 years ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆15Updated 3 years ago
• exascale-genomics / SAIGE-GPU
  A GPU version of SAIGE for full GRM GWAS analysis
  ☆14Updated 2 months ago
• Kyoko-wtnb / FUMA-webapp
  Source code of FUMA GWAS web application
  ☆56Updated last year
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆23Updated 3 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆48Updated 3 months ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆41Updated 6 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆21Updated 3 months ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆42Updated 2 years ago
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆69Updated this week
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆29Updated last year
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆21Updated 5 months ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated 9 months ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆46Updated 3 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆16Updated 10 months ago
• FinucaneLab / pops
  ☆71Updated 2 years ago
• weizhou0 / GATE
  ☆20Updated last year
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆76Updated last month
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆43Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆50Updated last month
• carlaml / LDpred-funct
  Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
  ☆17Updated 4 months ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆57Updated 5 years ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• FINNGEN / finemapping-pipeline
  Statistical fine-mapping pipeline in FinnGen
  ☆28Updated 2 months ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year