GWAS QC, PCA, haplotype phasing, genotype imputation
☆20Mar 31, 2026Updated last week
Alternatives and similar repositories for GWASpy
Users that are interested in GWASpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆11Jun 10, 2019Updated 6 years ago
- ☆12Jun 16, 2023Updated 2 years ago
- ☆53Jul 9, 2025Updated 9 months ago
- Program to simulate admixture between multiple populations☆19Mar 8, 2023Updated 3 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆13Mar 14, 2019Updated 7 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 11 years ago
- Workbench demo project: cross-analysis of AoU and UKB.☆15May 2, 2023Updated 2 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated last year
- CoMorMent-Containers☆36Feb 23, 2026Updated last month
- A set of tools for modelling ancestry patterns along the genome.☆24Mar 31, 2026Updated last week
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 5 months ago
- ☆15Nov 22, 2022Updated 3 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Oct 15, 2021Updated 4 years ago
- A tutorial for running Tractor and Tractor-Mix on toy datasets, including step-by-step instructions for preparing data, estimating PCs an…☆11Dec 22, 2025Updated 3 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆12Sep 3, 2024Updated last year
- ☆17Aug 25, 2025Updated 7 months ago
- ☆34Mar 7, 2021Updated 5 years ago
- Fast manhattenplots using ggplot2☆13Feb 19, 2024Updated 2 years ago
- ☆18Oct 4, 2023Updated 2 years ago
- PRS pipeline using PRS_CS☆15Oct 21, 2025Updated 5 months ago
- Script used to identify de novo variants from sequencing data.☆12Mar 2, 2017Updated 9 years ago
- Adding random effects model to the METAL software☆15Jun 11, 2023Updated 2 years ago
- PheTK Official Repository☆30Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Scripts for implementing the Tractor pipeline☆55Sep 4, 2025Updated 7 months ago
- Example for TWAS☆12Jan 23, 2022Updated 4 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆65Oct 22, 2025Updated 5 months ago
- An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …☆13Sep 27, 2024Updated last year
- A Fine-Mapping pipeline☆22Sep 13, 2019Updated 6 years ago
- https://filippob.github.io/introduction_to_gwas/☆22Jul 2, 2025Updated 9 months ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆16Feb 9, 2026Updated 2 months ago
- ☆13May 16, 2016Updated 9 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Jan 21, 2026Updated 2 months ago
- ☆21Nov 15, 2024Updated last year
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated 2 years ago
- Toolkit for analyzing genetics data from admixed populations☆30Feb 13, 2025Updated last year
- R package 📦 for handy functions when working with GWAS (summary) data☆17Jul 29, 2019Updated 6 years ago
- ☆13Jun 17, 2021Updated 4 years ago