atgu / GWASpy
GWAS QC, PCA, haplotype phasing, genotype imputation
☆17Updated this week
Alternatives and similar repositories for GWASpy:
Users that are interested in GWASpy are comparing it to the libraries listed below
- Manhattan++☆28Updated 11 months ago
- Cross-population fine-mapping☆30Updated last month
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- Tool for GWAS summary-level data analysis☆26Updated 4 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- ☆37Updated 4 months ago
- Large scale ancestry inference from PCA data☆21Updated last year
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆33Updated this week
- Toolkit for analyzing genetics data from admixed populations☆23Updated 11 months ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆36Updated last month
- ☆16Updated last year
- Quality control steps for GWAS☆19Updated last year
- Create LocusZoom-style plots in R.☆21Updated last year
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated 5 months ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆28Updated 2 years ago
- R package to perform Bayesian Genome-Wide Association Studies☆38Updated last year
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆12Updated 5 years ago
- genetic correlation between phenotypes in the UK biobank☆12Updated 11 months ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆10Updated 5 years ago
- ☆20Updated last year
- Sequence kernel association test (SKAT)☆44Updated last year
- A Toolset for Chromosome X-Wide Association Studies☆10Updated 6 years ago
- TWAS-pipeline☆22Updated 3 years ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- A Fine-Mapping pipeline☆19Updated 5 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆30Updated 11 months ago
- Software for estimating correlation of trait effect sizes across populations☆42Updated 2 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆18Updated 2 years ago