Alternatives and similar repositories for XGMix

Users that are interested in XGMix are comparing it to the libraries listed below

• carjed / helmsman
  highly-efficient & lightweight mutation signature matrix aggregation
  ☆19Updated 4 years ago
• awilfert / PSAP-pipeline
  ☆14Updated 8 years ago
• freeseek / mocha
  MOsaic CHromosomal Alterations (MoChA) caller
  ☆91Updated 5 months ago
• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆95Updated 3 years ago
• broadinstitute / gnomad_qc
  ☆68Updated last week
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33Updated 6 years ago
• Sentieon / sentieon-models
  Model files for Sentieon variant callers
  ☆16Updated 2 weeks ago
• yukt / MetaMinimac2
  ☆11Updated 2 years ago
• statgen / topmed_variant_calling
  ☆24Updated last year
• freeseek / gwaspipeline
  ☆40Updated 8 years ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆56Updated 3 months ago
• CshlSiepelLab / LINSIGHT
  ☆26Updated 7 months ago
• CNSGenomics / impute-pipe
  Canonical SGE cluster genotype imputation pipeline
  ☆12Updated 10 years ago
• Helix-Research-Lab / PGxPOP
  PGxPOP
  ☆17Updated 3 years ago
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆74Updated 4 years ago
• lukfor / pgs-calc
  Applying polygenic scores (PGS) on imputed genotypes
  ☆31Updated 3 months ago
• UW-GAC / GENESIS
  GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with popula…
  ☆43Updated 4 months ago
• talkowski-lab / svtk
  ☆35Updated 4 years ago
• atgu / hgdp_tgp
  ☆49Updated 6 months ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆30Updated 4 years ago
• daviddaiweizhang / fraposa
  ☆17Updated 2 years ago
• kkdey / aRchaic
  Exploration, clustering, visualization and classification of DNA damage patterns
  ☆19Updated 5 years ago
• broadinstitute / str-analysis
  Scripts and utilities for analyzing tandem repeats (TRs).
  ☆42Updated this week
• statgen / emeraLD
  tools to efficiently retrieve and calculate LD
  ☆33Updated 4 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆38Updated 3 years ago
• mskilab-org / JaBbA
  MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
  ☆59Updated 10 months ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆41Updated 2 years ago
• roryk / tiny-test-data
  Super small biological datasets for unit testing
  ☆62Updated 6 years ago
• statgen / locuszoom-standalone
  Create regional association plots from GWAS or meta-analysis
  ☆62Updated 6 years ago
• adimitromanolakis / sim1000G
  Simulation of rare and common variants based on 1000 genomes data
  ☆19Updated 4 years ago