omicsCore / scTyperLinks
scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
☆30Updated 2 years ago
Alternatives and similar repositories for scTyper
Users that are interested in scTyper are comparing it to the libraries listed below
Sorting:
- ☆49Updated 11 months ago
- ☆34Updated last year
- scWGCNA☆61Updated 2 years ago
- ☆32Updated 5 months ago
- ☆17Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆47Updated 6 months ago
- ☆33Updated 6 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆41Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- ☆13Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- ☆32Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- ☆39Updated 3 years ago
- Single-cell Case Control Analysis☆50Updated 8 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- ☆22Updated last year
- R package of CSOmap(developing☆14Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- A pipeline for scRNA-seq data analysis☆14Updated 3 months ago
- SCDC☆45Updated 3 weeks ago
- ☆47Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago