Alternatives and similar repositories for tigeR

Users that are interested in tigeR are comparing it to the libraries listed below

• dengchunyu / TIP
  The source code of web server TIP, including example data.
  ☆20Updated 6 years ago
• zdq0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆29Updated 2 years ago
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆18Updated last year
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• gabrielakinker / CCLE_heterogeneity
  ☆60Updated last year
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆26Updated 11 months ago
• wuaipinglab / scImmuCC
  Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.
  ☆10Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆28Updated 3 years ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆68Updated 2 months ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆39Updated 7 months ago
• NMikolajewicz / scMiko
  R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…
  ☆31Updated 2 years ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆17Updated 2 years ago
• bischofp / single_cell_lung_adenocarcinoma
  ☆32Updated 3 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆38Updated 2 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆30Updated 2 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆34Updated this week
• jig4003 / Ragas
  R tools for analysis and visualization of single-cell subclustering data
  ☆17Updated 2 months ago
• Famingzhao / NEPAL
  Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer
  ☆15Updated 11 months ago
• zgyaru / anti-PD1_ESCC
  ☆17Updated 2 years ago
• TheHumphreysLab / Mouse_DKD_Rx_Atlas
  ☆16Updated 3 years ago
• BioBam / scMaSigPro
  Implementation of MaSigPro for scRNA-Seq Data
  ☆18Updated last year
• miccec / yaGST
  ☆13Updated 8 years ago
• chensujun / scRNA
  ☆32Updated 4 years ago
• AndersonHu85 / ccRCC_multiomics
  ☆17Updated 2 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆44Updated last year
• jcolinge / BulkSignalR
  BulkSignalR
  ☆24Updated 3 months ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆48Updated last year