π― tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
β55Jan 21, 2026Updated 6 months ago
Alternatives and similar repositories for tigeR
Users that are interested in tigeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package to calculate Dynamical Network Biomarkers (DNB).β11Sep 16, 2022Updated 3 years ago
- β22Mar 6, 2023Updated 3 years ago
- β12Mar 5, 2024Updated 2 years ago
- β20Oct 23, 2023Updated 2 years ago
- Deconvolution of spatial transcriptomics at single-cell resolutionβ22Mar 25, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.β¦β292Updated this week
- Multi-Omics integration and VIsualization in Cancer Subtypingβ148Jul 19, 2021Updated 5 years ago
- β15Jul 25, 2025Updated 11 months ago
- The integration of single cell rank-based gene set enrichment analysisβ157Jan 14, 2026Updated 6 months ago
- simpler single cell RNAseq data Visualizationβ12Feb 28, 2025Updated last year
- The single T cell annotation tool for scRNA-seq dataβ28Apr 25, 2025Updated last year
- Construct Tumor Transition Zone Microenvironmentβ61Jun 25, 2025Updated last year
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzerβ83Dec 16, 2023Updated 2 years ago
- Quantifying metabolism activity at the single-cell resolutionβ191Feb 18, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq dataβ32Dec 22, 2022Updated 3 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptβ¦β11Jan 15, 2024Updated 2 years ago
- Ratio of the interferon-Ξ³ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanomaβ13Jun 4, 2023Updated 3 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".β136Sep 6, 2024Updated last year
- R client for the OmniPath web serviceβ170Apr 29, 2026Updated 2 months ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencingβ21Nov 18, 2025Updated 8 months ago
- A R package for advanced single cell data vizβ75Aug 29, 2025Updated 10 months ago
- β21Sep 1, 2024Updated last year
- Functions to analyze copy number aberrations in single-cell dataβ13Feb 3, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Machine learning-based integration model with elegant performanceβ206Sep 23, 2025Updated 9 months ago
- Codes used in pan-T cell analysisβ67Mar 13, 2023Updated 3 years ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seqβ16Dec 1, 2025Updated 7 months ago
- Hierarchical Cell Annotationβ31Nov 17, 2024Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)β124Apr 26, 2025Updated last year
- Gene group activity utility functions for Scanpyβ108Dec 21, 2024Updated last year
- π§ Visualizing Single Cell and Spatial Transcriptomicsβ51May 17, 2026Updated 2 months ago
- BioCarta pathway imagesβ11Jan 30, 2026Updated 5 months ago
- Methods to discover gene programs on single-cell dataβ197Updated this week
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkersβ21Oct 12, 2022Updated 3 years ago
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolutionβ14May 4, 2022Updated 4 years ago
- R package for Bioconductor submissionβ41Dec 8, 2022Updated 3 years ago
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networksβ27Apr 3, 2026Updated 3 months ago
- R package to infer biological activities from omics data using a collection of methods.β301Dec 16, 2025Updated 7 months ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cellsβ¦β21May 13, 2026Updated 2 months ago
- β10Jan 21, 2023Updated 3 years ago