jonfunk21 / ProteusAI
ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure prediction, prediction of mutational effects to protein ligand interactions powered by artificial intelligence.
☆45Updated this week
Alternatives and similar repositories for ProteusAI:
Users that are interested in ProteusAI are comparing it to the libraries listed below
- Efficient manipulation of protein structures in Python☆50Updated 2 months ago
- ☆72Updated 8 months ago
- ☆60Updated last month
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆35Updated last month
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆68Updated this week
- Improved antibody structure-based design using inverse folding☆86Updated this week
- Toolkit for alphafold3 input and output files☆59Updated last month
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆35Updated 3 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆65Updated 4 months ago
- Multimodal generation of protein sequence and all-atom structure using latent diffusion, with compositional function and taxonomic prompt…☆61Updated 3 weeks ago
- ☆41Updated 4 months ago
- Adapting protein language models for structure-conditioned design☆34Updated 5 months ago
- Structure prediction of alternative protein conformations☆72Updated 4 months ago
- Structure-conditioned masked language modeling for protein sequence design☆61Updated 11 months ago
- Efficient implementatin of ESM family.☆45Updated 3 weeks ago
- ☆51Updated 9 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆39Updated last month
- Protein Design by Machine Learning guided Directed Evolution☆28Updated 5 months ago
- Source code and examples for AlphaFold Unmasked☆49Updated 3 weeks ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆27Updated 7 months ago
- ☆72Updated this week
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆63Updated 2 months ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)☆50Updated 4 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆52Updated last week
- ☆97Updated 2 years ago
- A benchmark for 3D biomolecular structure prediction models☆52Updated last month
- Official repository of EnzymeFlow☆72Updated last month
- Template-based protein design with Raygun☆54Updated 2 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆33Updated this week
- Code for humanization of antibody and nanobody☆34Updated last month