Alternatives and similar repositories for pythia_ppi

Users that are interested in pythia_ppi are comparing it to the libraries listed below

• PKUliujl / GeoSeqBuilder
  ☆29Updated 9 months ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆25Updated 5 years ago
• regeneron-mpds / propermab
  ☆38Updated 7 months ago
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆22Updated 8 months ago
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆54Updated 2 months ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆24Updated last year
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆37Updated last week
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆47Updated last month
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆36Updated 2 weeks ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆57Updated 6 months ago
• anirudhvenk / antibody-dpo
  ☆25Updated 6 months ago
• zeysun / AntiBMPNN
  Repo of AntiBMPNN project for antibody sequence design.
  ☆20Updated 5 months ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆39Updated 5 months ago
• bene837 / af2seq
  ☆44Updated last year
• danny305 / StabilityOracle
  ☆29Updated last month
• CarbonMatrixLab / carbonnovo
  Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model
  ☆25Updated last year
• skalyaanamoorthy / PSLMs
  ☆21Updated last year
• bwicky / SAPP_DMX
  ☆25Updated 3 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆67Updated 4 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆41Updated 7 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated last year
• luwei0917 / AlphaFold3_PPI
  ☆15Updated last year
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆80Updated 4 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• Kuhlman-Lab / evopro
  ☆91Updated last month
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆84Updated last month
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆59Updated 9 months ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆46Updated 2 weeks ago
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 8 months ago
• liuyf020419 / SCUBA-D
  ☆62Updated last year