Alternatives and similar repositories for pythia_ppi

Users that are interested in pythia_ppi are comparing it to the libraries listed below

• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated 2 months ago
• PKUliujl / GeoSeqBuilder
  ☆28Updated 8 months ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆35Updated last year
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆34Updated 3 weeks ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆66Updated 2 months ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆25Updated 6 months ago
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆53Updated last month
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆21Updated 7 months ago
• regeneron-mpds / propermab
  ☆36Updated 6 months ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆24Updated 5 years ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆66Updated 3 months ago
• bene837 / af2seq
  ☆44Updated last year
• anirudhvenk / antibody-dpo
  ☆24Updated 4 months ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆24Updated last year
• danny305 / StabilityOracle
  ☆29Updated this week
• CarbonMatrixLab / carbonnovo
  Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model
  ☆24Updated 10 months ago
• RP3Net / RP3Net
  ☆11Updated 4 months ago
• bwicky / SAPP_DMX
  ☆23Updated 2 months ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆45Updated 10 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆54Updated 4 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 6 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆56Updated 7 months ago
• skalyaanamoorthy / PSLMs
  ☆20Updated 11 months ago
• bunzela / AIzymes
  ☆57Updated 2 months ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆53Updated 10 months ago
• ohuelab / ColabDesign-cyclic-binder
  ☆35Updated 2 years ago
• CarbonMatrixLab / immunefold
  Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning
  ☆22Updated 6 months ago
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆19Updated 9 months ago
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆23Updated 6 months ago