Alternatives and similar repositories for pythia_ppi

Users that are interested in pythia_ppi are comparing it to the libraries listed below

• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆34Updated this week
• PKUliujl / GeoSeqBuilder
  ☆28Updated 7 months ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆24Updated 5 years ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆35Updated last year
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆21Updated 6 months ago
• regeneron-mpds / propermab
  ☆35Updated 5 months ago
• RP3Net / RP3Net
  ☆11Updated 3 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated last month
• bwicky / SAPP_DMX
  ☆22Updated last month
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆23Updated last year
• bene837 / af2seq
  ☆44Updated last year
• danny305 / StabilityOracle
  ☆28Updated last year
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆25Updated 6 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆66Updated 2 months ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆52Updated 3 weeks ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆51Updated 7 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆20Updated 2 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆65Updated 2 months ago
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆36Updated 3 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• CarbonMatrixLab / carbonnovo
  Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model
  ☆24Updated 10 months ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• danny305 / MutComputeX
  ☆24Updated last year
• Kuhlman-Lab / evopro
  ☆87Updated last month
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 6 months ago
• pfizer-opensource / pfabnet-viscosity
  ☆14Updated 2 years ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆48Updated last year
• anirudhvenk / antibody-dpo
  ☆24Updated 4 months ago
• ohuelab / ColabDesign-cyclic-binder
  ☆34Updated 2 years ago