MutMap pipeline to identify causative mutations responsible for a phenotype
☆65Jan 31, 2025Updated last year
Alternatives and similar repositories for MutMap
Users that are interested in MutMap are comparing it to the libraries listed below
Sorting:
- QTL-seq pipeline to identify causative mutations responsible for a phenotype☆63Jan 31, 2025Updated last year
- Bulked-Segregant Analysis using vcf file with or without parents☆32Dec 20, 2024Updated last year
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆35Aug 1, 2025Updated 7 months ago
- Build haplotye and generate figures☆19Nov 4, 2025Updated 4 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Jun 6, 2019Updated 6 years ago
- QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis☆82Jan 20, 2020Updated 6 years ago
- SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.☆39Apr 5, 2019Updated 6 years ago
- A pipeline for isoseq☆23Jun 8, 2018Updated 7 years ago
- R package for binmap☆12Aug 3, 2023Updated 2 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆110Mar 13, 2026Updated last week
- ☆11Mar 14, 2026Updated last week
- TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions☆20Oct 22, 2023Updated 2 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 8 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- A parallel wrapper for LTR_FINDER☆55Mar 8, 2026Updated last week
- ☆21Sep 22, 2022Updated 3 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆107Nov 17, 2025Updated 4 months ago
- A library for running k-mers based GWAS☆125Oct 29, 2024Updated last year
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Nov 24, 2025Updated 3 months ago
- SSRMMD: A Rapid and Accurate Algorithm for Mining SSR Feature Loci and Candidate Polymorphic SSRs Based on Assembled Sequences.☆16Sep 2, 2020Updated 5 years ago
- ☆29Apr 16, 2023Updated 2 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Feb 27, 2020Updated 6 years ago
- ☆12Apr 14, 2021Updated 4 years ago
- ☆39Mar 23, 2020Updated 5 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆207Jul 5, 2025Updated 8 months ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated 9 months ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 9 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆203Aug 15, 2024Updated last year
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 2 months ago
- A haplotype analysis toolkit for natural variation study.☆31Oct 3, 2023Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Sep 14, 2020Updated 5 years ago
- The codes to assemble two sorghum cultivars☆10May 11, 2024Updated last year
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- Long Reads Annotation pipeline☆73Mar 31, 2022Updated 3 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Mar 2, 2023Updated 3 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆103Jun 13, 2022Updated 3 years ago