Alternatives and similar repositories for GMStool:

Users that are interested in GMStool are comparing it to the libraries listed below

• hemstrow / snpR
  ☆29Updated last week
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 2 months ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆42Updated last week
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆34Updated 2 months ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆24Updated 5 years ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆30Updated 11 months ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 2 years ago
• jaredgk / PPP
  Repository for pipeline code
  ☆24Updated 11 months ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆28Updated 3 years ago
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆22Updated 2 months ago
• bcbc-group / CyVerese_SNP_calling_webinar
  ☆10Updated 4 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆33Updated 4 years ago
• GuangchuangYu / plotting_tree_with_data
  Two methods for mapping and visualizing associated data on phylogeny using ggtree
  ☆12Updated 6 years ago
• mattravenhall / SV-Pop
  Upscaling SV detection to a multi-population level.
  ☆21Updated 4 years ago
• YaoLab-Bioinfo / MaizeSNPDB
  A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines
  ☆13Updated 2 years ago
• evodify / allele-specific-expression
  Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)
  ☆11Updated 6 years ago
• MorrellLAB / sequence_handling
  A series of scripts to automate sequence workflows
  ☆19Updated 5 months ago
• filippob / introduction_to_gwas
  https://filippob.github.io/introduction_to_gwas/
  ☆19Updated 7 months ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆15Updated last week
• hsinnan75 / MapCaller
  MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
  ☆30Updated 4 years ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆16Updated 5 years ago
• YTLogos / ttplot
  Tao Yan's Plot Toolkit
  ☆11Updated 5 years ago
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆17Updated 5 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 6 years ago
• YaoLab-Bioinfo / binQTL
  QTL mapping with binmap data
  ☆17Updated 5 years ago
• sguizard / DensityMap
  DensityMap is perl tool for the visualization of features density along chromosomes
  ☆17Updated 2 years ago
• AlexGa / Phylostratigraphy
  Pipeline for Phylostratigraphy
  ☆13Updated 2 years ago
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆23Updated 2 months ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆24Updated 4 years ago