Alternatives and similar repositories for GMStool

Users that are interested in GMStool are comparing it to the libraries listed below

• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 3 years ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 3 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆29Updated 6 years ago
• NBISweden / Genome_Annotation_workflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆46Updated 2 weeks ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆44Updated 6 months ago
• ANGSD / NgsRelate
  ☆46Updated 10 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 10 months ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆34Updated 5 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆27Updated 9 months ago
• AppliedBioinformatics / Brassica_oleracea_rapa_napus_code
  Code for the Brassica oleracea/rapa/napus genomic comparison
  ☆16Updated 4 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆66Updated 3 weeks ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆30Updated 4 years ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆31Updated last week
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆39Updated 2 years ago
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆24Updated last year
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆29Updated 7 years ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 10 years ago
• bioinfo-ut / GenomeTester4
  A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
  ☆35Updated 3 years ago
• mattravenhall / SV-Pop
  Upscaling SV detection to a multi-population level.
  ☆22Updated 6 months ago
• GuangchuangYu / plotting_tree_with_data
  Two methods for mapping and visualizing associated data on phylogeny using ggtree
  ☆12Updated 7 years ago
• YaoLab-Bioinfo / intansv
  Integrative analysis of structural variations.
  ☆40Updated 2 years ago
• bcbc-group / CyVerese_SNP_calling_webinar
  ☆10Updated 5 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆44Updated 6 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆52Updated 4 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆49Updated 4 years ago
• YTLogos / ttplot
  Tao Yan's Plot Toolkit
  ☆12Updated 6 years ago
• hemstrow / snpR
  ☆31Updated 2 weeks ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆25Updated 4 years ago
• YaoLab-Bioinfo / MaizeSNPDB
  A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines
  ☆14Updated 3 years ago
• SFUStatgen / LDheatmap
  ☆18Updated 2 years ago