Alternatives and similar repositories for GMStool

Users that are interested in GMStool are comparing it to the libraries listed below

• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆46Updated last year
• bcbc-group / CyVerese_SNP_calling_webinar
  ☆10Updated 5 years ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 3 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 3 years ago
• AppliedBioinformatics / Brassica_oleracea_rapa_napus_code
  Code for the Brassica oleracea/rapa/napus genomic comparison
  ☆16Updated 4 years ago
• hemstrow / snpR
  ☆31Updated 2 weeks ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆29Updated 6 years ago
• ANGSD / NgsRelate
  ☆46Updated 10 months ago
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆24Updated last year
• esctrionsit / snphub
  A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.
  ☆19Updated last year
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆31Updated 3 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 9 months ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated 2 years ago
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆20Updated 4 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆65Updated this week
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆29Updated 7 years ago
• mijangos81 / PopGenR
  Population Genomics in R workshop
  ☆12Updated last year
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆43Updated 5 months ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆47Updated this week
• GuangchuangYu / plotting_tree_with_data
  Two methods for mapping and visualizing associated data on phylogeny using ggtree
  ☆12Updated 7 years ago
• YTLogos / BnaSNPDB
  An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions
  ☆14Updated 10 months ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆96Updated 4 months ago
• YaoLab-Bioinfo / intansv
  Integrative analysis of structural variations.
  ☆40Updated 2 years ago
• slzarate / parliament2
  Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data
  ☆22Updated 4 years ago
• YTLogos / ttplot
  Tao Yan's Plot Toolkit
  ☆12Updated 6 years ago
• ekfchan / evachan.org-Rscripts
  Handy genetics-related R scripts
  ☆32Updated 6 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆30Updated 4 years ago
• bvilhjal / mixmogam
  Mixed Model Package For Genome-wide association mapping.
  ☆17Updated 6 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆25Updated 3 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆49Updated 4 years ago