wangjr03 / FLAMINGO
☆17Updated 10 months ago
Alternatives and similar repositories for FLAMINGO:
Users that are interested in FLAMINGO are comparing it to the libraries listed below
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆18Updated last year
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆36Updated last year
- ☆36Updated 5 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- ☆20Updated 4 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated last year
- ☆21Updated last year
- scripts for analyzing the CVDC data.☆17Updated 5 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆16Updated 4 months ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆18Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- Cooler demo using a Jupyter notebook Binder☆17Updated 4 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- snakemake pipeline for Hi-C post-processing☆22Updated 8 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 10 months ago
- bioinformatic pipeline for GLORI☆19Updated 9 months ago
- 4C-seq processing pipeline☆23Updated 10 months ago
- ☆24Updated 2 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆57Updated last year
- ☆33Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆69Updated last year
- Python library for processing and visualizing Hi-C data☆20Updated 4 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆67Updated last year