wangjr03 / FLAMINGO
☆15Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for FLAMINGO
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆36Updated 9 months ago
- Cooler demo using a Jupyter notebook Binder☆15Updated 4 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆59Updated last year
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆13Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- ☆20Updated 4 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆18Updated 10 months ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆14Updated 3 weeks ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆52Updated last year
- Relates to the article by Lioy, Cournac et al., Cell, 2018 (Functional partitioning of a bacterial chromosome through the interplay of nu…☆11Updated 4 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated 4 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆62Updated 10 months ago
- ☆24Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆65Updated last year
- Genome-wide contact analysis using sklearn☆59Updated 7 months ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 3 months ago
- A self-contained repository of all code needed for SPRITE analysis☆20Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- ☆17Updated 8 months ago
- HiCorr: a Hi-C data bias-correction pipeline☆27Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆43Updated 5 years ago
- Tutorial Website☆53Updated 3 years ago
- ☆19Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆20Updated last year
- ☆27Updated 3 years ago