wangjr03 / FLAMINGO
☆16Updated last year
Alternatives and similar repositories for FLAMINGO:
Users that are interested in FLAMINGO are comparing it to the libraries listed below
- snakemake pipeline for Hi-C post-processing☆22Updated 9 months ago
- ☆37Updated 5 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆22Updated last week
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆18Updated 5 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆42Updated 2 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆38Updated 3 years ago
- ☆22Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- A Python implementation of the original DI domain caller☆12Updated 4 years ago
- ☆20Updated 4 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- ☆11Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 6 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated 6 months ago
- ☆33Updated 2 years ago
- ☆33Updated 2 years ago
- RiboPlotR package for Ribo-plot☆15Updated last year
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆11Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 5 years ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 9 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated last year
- A script to make downloading of SRA/GEO data easier☆30Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Long read to rMATS☆31Updated last year
- Single-cell Hi-C data analysis toolbox☆26Updated 3 years ago
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆12Updated 2 years ago