kundajelab / 3DChromatin_ReplicateQCLinks
Software to compute reproducibility and quality scores for Hi-C data
☆47Updated 6 years ago
Alternatives and similar repositories for 3DChromatin_ReplicateQC
Users that are interested in 3DChromatin_ReplicateQC are comparing it to the libraries listed below
Sorting:
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- Genome-wide contact analysis using sklearn☆65Updated last year
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 2 months ago
- 4C-seq processing pipeline☆23Updated 2 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- Tutorial Website☆59Updated 4 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- chia pet analysis software☆25Updated 6 years ago
- A preprocessing and QC pipeline for HiChIP data☆38Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 4 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- IDR☆31Updated 2 years ago
- Genomic Association Tester☆31Updated 2 years ago
- Code for finding putative enhancers using Hi-C data☆27Updated 7 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- ☆24Updated 4 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- A self-contained repository of all code needed for SPRITE analysis☆21Updated 3 years ago
- ☆30Updated 6 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated last year
- Statistically Significant loops from HiChIP data☆43Updated last year
- ☆37Updated 5 years ago