kundajelab / 3DChromatin_ReplicateQCLinks
Software to compute reproducibility and quality scores for Hi-C data
☆50Updated 6 years ago
Alternatives and similar repositories for 3DChromatin_ReplicateQC
Users that are interested in 3DChromatin_ReplicateQC are comparing it to the libraries listed below
Sorting:
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- An Optimized Nested TAD caller for Hi-C data☆23Updated 4 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- 4C-seq processing pipeline☆25Updated 6 months ago
- IDR☆30Updated 2 years ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- chia pet analysis software☆25Updated 6 years ago
- A Python implementation for BH-FDR and HiCCUPS☆51Updated 5 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆29Updated 6 months ago
- Tutorial Website☆59Updated 4 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆75Updated 2 months ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆111Updated 4 years ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- ☆38Updated 4 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- Genomic Association Tester☆32Updated 2 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆89Updated 3 years ago
- Statistically Significant loops from HiChIP data☆44Updated last year
- ☆72Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 2 months ago
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago