open2c / quaichLinks
snakemake pipeline for Hi-C post-processing
☆22Updated 11 months ago
Alternatives and similar repositories for quaich
Users that are interested in quaich are comparing it to the libraries listed below
Sorting:
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- Architectural stripe detection from 3D genome conformation data☆17Updated last year
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated last year
- Cooler demo using a Jupyter notebook Binder☆18Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆15Updated last week
- Blazing fast toolkit to work with .hic and .cool files☆31Updated this week
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- Python bindings to UCSC BigWig and BigBed library☆33Updated 2 months ago
- IDR☆31Updated 2 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆23Updated 2 months ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 2 months ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆15Updated 3 years ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- An Optimized Nested TAD caller for Hi-C data☆22Updated 3 years ago
- Statistically Significant loops from HiChIP data☆43Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 2 months ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆65Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆73Updated 2 years ago
- Lightweight converter between hic and cool contact matrices.☆73Updated 11 months ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆26Updated 2 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated last year
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆47Updated last week