Alternatives and similar repositories for ChromatinImaging:

Users that are interested in ChromatinImaging are comparing it to the libraries listed below

• b2jia / jie
  A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.
  ☆18Updated last year
• JinLabBioinfo / DeepLoop
  DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data
  ☆31Updated 2 years ago
• LabShengLi / sci
  ☆15Updated 2 years ago
• zhangyan32 / HiCPlus
  ☆30Updated 5 years ago
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 5 years ago
• JinLabBioinfo / HiCorr
  HiCorr: a Hi-C data bias-correction pipeline
  ☆28Updated last year
• Hughes-Genome-Group / deepC
  A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence
  ☆33Updated 9 months ago
• yal054 / epiformer
  ☆25Updated 8 months ago
• mostafavilabuw / EnformerAssessment
  ☆17Updated 5 months ago
• tariks / peakachu
  Genome-wide contact analysis using sklearn
  ☆60Updated 10 months ago
• VRam142 / combinatorialHiC
  Scripts + resources for analyzing combinatorial Hi-C data
  ☆28Updated 5 years ago
• hmatsu1226 / SCODE
  SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
  ☆42Updated 5 years ago
• wycwycpku / RSCORE
  ☆25Updated 3 years ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆25Updated 2 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆40Updated 2 years ago
• ma-compbio / MATCHA
  multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
  ☆29Updated 2 years ago
• liu-bioinfo-lab / scHiCTools
  a computational tool for analyzing single cell Hi-C data
  ☆24Updated 9 months ago
• zhoujt1994 / scHiCluster
  ☆63Updated last month
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 3 years ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• MacoskoLab / slideseq-tools
  Tools for analyzing Slide-seq data
  ☆31Updated last year
• SchulzLab / TEPIC
  Annotation of genomic regions using transcription factor binding sites and epigenetic data
  ☆40Updated 2 years ago
• soedinglab / prosstt
  PRObabilistic Simulations of ScRNA-seq Tree-like Topologies
  ☆26Updated last year
• dejunlin / hicrep
  Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support
  ☆36Updated last year
• velocyto-team / velocyto-notebooks
  ☆55Updated 6 years ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 4 years ago
• ZhuangLab / Chromatin_Analysis_2020_cell
  Source codes and example scripts for chromatin tracing projects in Zhuang lab
  ☆25Updated 3 years ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆27Updated last week
• hiclib / pastis
  Poisson-based algorithm for stable inference of DNA Structure
  ☆36Updated 2 years ago
• SchulzLab / STARE
  TF analysis from epigenetic and Hi-C data
  ☆17Updated 2 months ago