YaqiangCao / cLoops2
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
☆45Updated last month
Alternatives and similar repositories for cLoops2:
Users that are interested in cLoops2 are comparing it to the libraries listed below
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆59Updated last year
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆69Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆64Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- ☆24Updated 3 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆18Updated this week
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- Statistically Significant loops from HiChIP data☆39Updated 9 months ago
- Python library for processing and visualizing Hi-C data☆20Updated 4 years ago
- Genome-wide contact analysis using sklearn☆60Updated 9 months ago
- Tutorial Website☆55Updated 3 years ago
- scripts for analyzing the CVDC data.☆17Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆36Updated 3 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆55Updated last year
- Software for Quantifying Interspersed Repeat Expression☆53Updated 2 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆44Updated this week
- Full-length transcriptome splicing and mutation analysis☆76Updated 6 months ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆55Updated 5 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- A Python implementation for BH-FDR and HiCCUPS☆43Updated 2 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆63Updated 2 months ago
- Lightweight converter between hic and cool contact matrices.☆67Updated 6 months ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆65Updated last month
- SingleCell Nanopore sequencing data analysis☆53Updated last month
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆43Updated 5 months ago
- Long-read Isoform Quantification and Analysis☆39Updated last week