YaqiangCao / cLoops2Links
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
☆52Updated 4 months ago
Alternatives and similar repositories for cLoops2
Users that are interested in cLoops2 are comparing it to the libraries listed below
Sorting:
- ☆25Updated 4 years ago
- Genome-wide contact analysis using sklearn☆70Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- A Python implementation for BH-FDR and HiCCUPS☆52Updated 6 months ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆17Updated 4 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆72Updated last year
- scripts for analyzing the CVDC data.☆19Updated 5 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆24Updated 7 months ago
- Docker for 4DN Hi-C processing pipeline☆60Updated 11 months ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 2 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated last year
- An Optimized Nested TAD caller for Hi-C data☆24Updated 4 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆75Updated 3 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆31Updated last week
- Package for analysis and characterization of differential TADs☆26Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆76Updated 2 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆39Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Tutorial Website☆60Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆75Updated 2 years ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆12Updated 2 years ago
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆21Updated last year
- ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization☆29Updated 4 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆56Updated last year