ysora / stripennLinks
Architectural stripe detection from 3D genome conformation data
☆18Updated last year
Alternatives and similar repositories for stripenn
Users that are interested in stripenn are comparing it to the libraries listed below
Sorting:
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆73Updated 2 years ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆67Updated last year
- Lightweight converter between hic and cool contact matrices.☆73Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆74Updated 5 months ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated 8 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆15Updated 3 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- An Optimized Nested TAD caller for Hi-C data☆22Updated 4 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated 2 months ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago
- Blazing fast toolkit to work with .hic and .cool files☆31Updated 2 weeks ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated 2 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated last year
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆69Updated 8 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆113Updated 2 weeks ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆23Updated 3 months ago
- ☆23Updated 5 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 6 years ago
- Quantification of transposable element expression using RNA-seq☆71Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago