ysora / stripennLinks
Architectural stripe detection from 3D genome conformation data
☆18Updated last month
Alternatives and similar repositories for stripenn
Users that are interested in stripenn are comparing it to the libraries listed below
Sorting:
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- Genome-wide contact analysis using sklearn☆69Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆75Updated 3 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆76Updated 9 months ago
- A Python implementation for BH-FDR and HiCCUPS☆52Updated 6 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- An Optimized Nested TAD caller for Hi-C data☆24Updated 4 years ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆15Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆71Updated 11 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 6 months ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆73Updated 2 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 4 months ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Docker for 4DN Hi-C processing pipeline☆60Updated 11 months ago
- Red-C data processing☆15Updated 2 years ago
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 2 months ago
- Cooler demo using a Jupyter notebook Binder☆18Updated 5 years ago