ysora / stripennLinks
Architectural stripe detection from 3D genome conformation data
☆17Updated last year
Alternatives and similar repositories for stripenn
Users that are interested in stripenn are comparing it to the libraries listed below
Sorting:
- snakemake pipeline for Hi-C post-processing☆22Updated 11 months ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆15Updated 3 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- An Optimized Nested TAD caller for Hi-C data☆22Updated 3 years ago
- Genome-wide contact analysis using sklearn☆65Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆73Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆29Updated last week
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆15Updated last week
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆74Updated 4 months ago
- a computational tool for analyzing single cell Hi-C data☆25Updated last year
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆22Updated last month
- Python bindings to UCSC BigWig and BigBed library☆33Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆62Updated last month
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- ☆22Updated last year
- IDR☆31Updated 2 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 4 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆65Updated last year