Patchouli-M / SequencingCancerFinderLinks
☆43Updated 8 months ago
Alternatives and similar repositories for SequencingCancerFinder
Users that are interested in SequencingCancerFinder are comparing it to the libraries listed below
Sorting:
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆109Updated 7 months ago
- These are scripts for pan-cacner B cells analyses.☆58Updated last year
- Spatial Cellular Estimator for Tumors☆60Updated last month
- ☆28Updated 2 years ago
- Gene group activity utility functions for Scanpy☆100Updated last year
- ☆40Updated 3 years ago
- Spatial Transcriptomic Analysis of OSCC samples☆28Updated last month
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆128Updated 8 months ago
- ☆60Updated last year
- The current study provides a comprehensive insights into the PDAC metastatic biology.☆25Updated last year
- ☆20Updated 4 years ago
- ☆34Updated 3 months ago
- RA Synovial Single-cell Multimodal Cell Atlas☆19Updated last year
- R implementation of GeneTrajectory☆69Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆131Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Updated 9 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Updated 11 months ago
- Code used to benchmark Xenium☆73Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆40Updated 4 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆87Updated last year
- ☆46Updated last year
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- ☆129Updated 3 years ago
- ☆52Updated 3 months ago
- Predict RNA velocity through deep learning☆72Updated 2 years ago
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- ☆54Updated 5 months ago
- Spatial transcriptomics of heart tissue☆107Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆82Updated 9 months ago
- ☆57Updated last year