Alternatives and similar repositories for SequencingCancerFinder

Users that are interested in SequencingCancerFinder are comparing it to the libraries listed below

• yuyang3 / pan-B
  These are scripts for pan-cacner B cells analyses.
  ☆58Updated last year
• Junjie-Hu / NSCLC-immunotherapy
  ☆28Updated 2 years ago
• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆109Updated 7 months ago
• immunogenomics / RA_Atlas_CITEseq
  RA Synovial Single-cell Multimodal Cell Atlas
  ☆19Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆99Updated last year
• Masood-Lab / PDAC_Mets
  The current study provides a comprehensive insights into the PDAC metastatic biology.
  ☆24Updated last year
• strangephone / EENT-ONB
  scRNA-seq analysis of EENT-ONB
  ☆22Updated 2 years ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated 2 weeks ago
• QuKunLab / SPACEL
  ☆60Updated last year
• rohitarorayyc / SpatialTranscriptomics
  Spatial Transcriptomic Analysis of OSCC samples
  ☆28Updated 3 weeks ago
• TencentAILabHealthcare / spatialID
  ☆40Updated 3 years ago
• Banovich-Lab / Spatial_PF
  ☆34Updated 2 months ago
• bsungwoo / spSeudoMap
  spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
  ☆13Updated last year
• maximemeylan / Meylan_et_al_2022
  ☆20Updated 4 years ago
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆62Updated 2 months ago
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆130Updated last year
• Lan-lab / sc-GC
  ☆32Updated 3 years ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆49Updated 6 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 11 months ago
• QiangShiPKU / CoVarNet
  ☆54Updated 5 months ago
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆50Updated 5 months ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆34Updated 9 months ago
• aliceygao / pan-Fibroblast
  ☆55Updated last year
• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆80Updated 8 months ago
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆28Updated last year
• YMa-lab / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆41Updated 11 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆71Updated 2 years ago
• jyyulab / Spotiphy
  Spot pseudo-Imager on top of histology
  ☆44Updated last month
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆32Updated 5 months ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆85Updated 11 months ago