Patchouli-M / SequencingCancerFinder
☆30Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for SequencingCancerFinder
- ☆34Updated 2 years ago
- These are scripts for pan-cacner B cells analyses.☆41Updated 4 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆39Updated 3 months ago
- RA Synovial Single-cell Multimodal Cell Atlas☆12Updated 8 months ago
- ☆18Updated 2 years ago
- Spatial Cellular Estimator for Tumors☆42Updated this week
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- ☆16Updated last year
- Construct Tumor Transition Zone Microenvironment☆35Updated this week
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆82Updated 2 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆31Updated 6 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆44Updated last year
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆40Updated 3 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆59Updated last year
- A tool for semi-automatic cell type harmonization and integration☆94Updated 10 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆27Updated 5 months ago
- ☆25Updated 10 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆18Updated 2 months ago
- ☆24Updated last month
- ☆17Updated last year
- Single Cell Analysis Operations☆13Updated 8 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆96Updated this week
- ☆27Updated 2 years ago
- These are scripts for pan-cacner NK cells analyses.☆63Updated last year
- R implementation of GeneTrajectory☆50Updated 7 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆59Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆66Updated this week
- ☆11Updated last year
- SPROD: Spatial expression profiling de-noising☆33Updated last year