A comprehensive toolkit for single-cell methylation sequencing data analysis
☆33Jan 29, 2026Updated 2 months ago
Alternatives and similar repositories for amethyst
Users that are interested in amethyst are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package with CLI for the analysis of single cell methylation data.☆20Oct 29, 2024Updated last year
- ☆14Jul 22, 2025Updated 8 months ago
- ☆23Apr 17, 2020Updated 5 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆18Mar 27, 2026Updated 3 weeks ago
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆12Mar 22, 2024Updated 2 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- Toolbox of the Human Neural Organoid Cell Atlas☆33Updated this week
- ☆25Aug 24, 2025Updated 7 months ago
- Modelling DNA methylation profiles☆24Jul 16, 2020Updated 5 years ago
- Aligner for sequencing data☆21Apr 12, 2016Updated 10 years ago
- ☆12Sep 22, 2025Updated 6 months ago
- Spatial omics analysis and visualization library☆24Updated this week
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Calculate DNA methylation age using Horvath 2013 method☆11Aug 25, 2017Updated 8 years ago
- ☆54Mar 23, 2026Updated 3 weeks ago
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆85Aug 10, 2025Updated 8 months ago
- ☆12Oct 23, 2023Updated 2 years ago
- Visual exploratory analysis of gene expression data☆46Apr 8, 2026Updated last week
- The scripts used for analyzing JAX mouse dataset☆26Oct 24, 2024Updated last year
- ☆10Mar 11, 2025Updated last year
- Main codes for AD epigenetics paper by Nativio et al.☆11Dec 7, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Genomic coordinates of problematic genomic regions as GRanges☆51Dec 10, 2025Updated 4 months ago
- Optimise PCR primer-set grouping for genetics research☆18Feb 24, 2026Updated last month
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆38Mar 30, 2026Updated 2 weeks ago
- A networks analysis pipeline for RNASeq time series data☆14Oct 16, 2020Updated 5 years ago
- ☆14Jun 17, 2023Updated 2 years ago
- Easy & Pretrained SOTA Deep Learning for RNA strings☆12Apr 15, 2022Updated 4 years ago
- ☆14Apr 22, 2022Updated 3 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Jul 28, 2025Updated 8 months ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆13Apr 8, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- trajectory inference☆107Jan 27, 2025Updated last year
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆446Aug 8, 2025Updated 8 months ago
- Danfoss Ally eTRV automations and scripts for Home Assistant☆11Oct 15, 2025Updated 6 months ago
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆41Mar 10, 2024Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Apr 8, 2026Updated last week
- scID☆14Oct 21, 2021Updated 4 years ago
- Introduction to Workflows with Common Workflow Language☆11Apr 17, 2024Updated last year