A comprehensive toolkit for single-cell methylation sequencing data analysis
☆34Jan 29, 2026Updated 8 months ago
Alternatives and similar repositories for amethyst
Users that are interested in amethyst are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jul 22, 2025Updated last year
- Python package with CLI for the analysis of single cell methylation data.☆22Oct 29, 2024Updated last year
- ☆12Mar 12, 2024Updated 2 years ago
- Modelling DNA methylation profiles☆24Jul 16, 2020Updated 6 years ago
- Toolkit for single-cell DNA methylation analysis.☆52May 25, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for DNA methylation analysis☆21Oct 2, 2026Updated 3 weeks ago
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆25Jan 26, 2024Updated 2 years ago
- ☆23Apr 17, 2020Updated 6 years ago
- Single-cell COPy number Estimation☆18Dec 11, 2022Updated 3 years ago
- Toolkit for single-cell copy number analysis☆36Dec 15, 2025Updated 10 months ago
- Bayesian Clustering and Imputation of Single Cell Methylomes☆16Jul 16, 2020Updated 6 years ago
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆34Sep 14, 2024Updated 2 years ago
- Shiny browser for single cell RNAseq data☆12Oct 7, 2022Updated 4 years ago
- ☆58Jan 4, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Mapping Alternative Splicing Events to pRoteins☆21Feb 8, 2022Updated 4 years ago
- ScaleBio Single-cell RNA Nextflow Workflow☆43Aug 21, 2026Updated 2 months ago
- ☆34Jul 7, 2026Updated 3 months ago
- Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis.☆17Sep 13, 2021Updated 5 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆40Oct 1, 2026Updated 3 weeks ago
- A rust-native port of wfa2lib☆14Aug 1, 2026Updated 2 months ago
- ☆11Feb 11, 2021Updated 5 years ago
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆13Mar 22, 2024Updated 2 years ago
- sake☆29Feb 8, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TF Binding and Expression Target Analysis 2☆22Nov 19, 2025Updated 11 months ago
- Workflow for preprocessing cfDNA samples.☆14Nov 11, 2024Updated last year
- NMF and complete deconvolution algorithm☆10Sep 21, 2026Updated last month
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated last year
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated 2 years ago
- Tools for analyzing DNA methylation data☆48Updated this week
- ☆54Aug 1, 2024Updated 2 years ago
- ☆19Apr 9, 2026Updated 6 months ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆12Sep 7, 2023Updated 3 years ago
- Repository of spatial datasets and scripts☆12Mar 20, 2022Updated 4 years ago
- ☆26Aug 24, 2025Updated last year
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆24Feb 14, 2021Updated 5 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 8 years ago
- Aligner for sequencing data☆21Apr 20, 2026Updated 6 months ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆23May 13, 2026Updated 5 months ago