Alternatives and similar repositories for amethyst:

Users that are interested in amethyst are comparing it to the libraries listed below

• gxiaolab / REDITs
  RNA editing tests
  ☆16Updated 4 years ago
• noush-joglekar / scisorseqr
  scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…
  ☆37Updated 2 years ago
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆44Updated 7 months ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 4 years ago
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆19Updated 11 months ago
• bvaldebenitom / SoloTE
  ☆32Updated 9 months ago
• UPSUTER / GEMLI
  ☆30Updated last month
• satijalab / PASTA
  ☆17Updated 6 months ago
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆48Updated 11 months ago
• yjzhang / split-seq-pipeline
  ☆21Updated 4 years ago
• nghiavtr / SCmut
  ☆31Updated 5 years ago
• bcgsc / RNA-Scoop
  interactive visualization of single-cell transcriptomes
  ☆11Updated last year
• andygxzeng / BoneMarrowMap
  A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …
  ☆36Updated 4 months ago
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆32Updated 2 years ago
• ElkonLab / scAPA
  This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.
  ☆19Updated 3 years ago
• UcarLab / AMULET
  A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
  ☆31Updated 2 years ago
• databio / pepatac
  A modular, containerized pipeline for ATAC-seq data processing
  ☆55Updated last week
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆45Updated last year
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆56Updated last year
• Zhang-lab / BeCorrect
  ☆14Updated 4 years ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆77Updated 2 years ago
• HYsxe / PRINT
  ☆36Updated 6 months ago
• mcgilldinglab / MATES
  A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data
  ☆22Updated 2 months ago
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆94Updated 4 months ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 2 months ago
• mbassalbioinformatics / CnRAP
  Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.
  ☆18Updated 3 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆23Updated 7 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆40Updated 8 months ago
• MarioniLab / EmptyDropsMultiome
  Removing empty droplets in multiome datasets
  ☆15Updated 9 months ago
• tanlongzhi / dip-c
  Tools to analyze Dip-C (or other 3C/Hi-C) data
  ☆63Updated 3 months ago