lrylaarsdam / amethyst
An analysis toolkit for single-cell methylation sequencing data
☆16Updated this week
Alternatives and similar repositories for amethyst:
Users that are interested in amethyst are comparing it to the libraries listed below
- Estimate locus specific human LINE-1 expression.☆33Updated 2 years ago
- RNA editing tests☆17Updated 4 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆35Updated 3 months ago
- ☆32Updated 9 months ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆37Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- single-cell clustering based on alternative splicing landscapes☆19Updated last year
- Demultiplexing and debarcoding tool designed for LR-Split-seq data.☆22Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆45Updated 7 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Tutorial Website☆57Updated 4 years ago
- ☆30Updated 2 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆22Updated 2 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- SNV calling from single cell sequencing☆93Updated 4 months ago
- ☆17Updated 6 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated this week
- ☆14Updated 4 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆51Updated 3 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated last week
- interactive visualization of single-cell transcriptomes☆11Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆57Updated last year
- An R package to time somatic mutations☆61Updated 4 years ago
- SingleCell Nanopore sequencing data analysis☆56Updated 3 months ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Tools which deal with multiple single cell measurements☆23Updated 3 months ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated 11 months ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 10 months ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated this week