lrylaarsdam / amethystLinks
An analysis toolkit for single-cell methylation sequencing data
☆20Updated last week
Alternatives and similar repositories for amethyst
Users that are interested in amethyst are comparing it to the libraries listed below
Sorting:
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆74Updated 2 years ago
- ☆32Updated last year
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- SNV calling from single cell sequencing☆104Updated 8 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆69Updated 8 months ago
- ☆74Updated 2 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆67Updated last year
- ☆95Updated last week
- Demultiplexing and debarcoding tool designed for LR-Split-seq data.☆22Updated last year
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆10Updated 5 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆67Updated last week
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 3 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆28Updated 3 months ago
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- Basic workflow for ATAC-seq analysis☆81Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆50Updated 11 months ago
- ☆38Updated 5 years ago
- ☆20Updated 10 months ago
- Quantification of transposable element expression using RNA-seq☆71Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated last year
- Tutorial Website☆59Updated 4 years ago