lrylaarsdam / amethystLinks
A comprehensive toolkit for single-cell methylation sequencing data analysis
☆30Updated 2 weeks ago
Alternatives and similar repositories for amethyst
Users that are interested in amethyst are comparing it to the libraries listed below
Sorting:
- SNV calling from single cell sequencing☆118Updated last year
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆73Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆62Updated last month
- ☆82Updated 8 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Updated 5 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- ☆33Updated last year
- Estimate locus specific human LINE-1 expression.☆39Updated 2 months ago
- single-cell clustering based on alternative splicing landscapes☆23Updated last year
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆85Updated 2 weeks ago
- ☆21Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated 3 weeks ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated last week
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.☆17Updated 3 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- Links to ATAC-seq analysis tools☆75Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- Analysis of Paired-Tag datasets☆43Updated last year
- Efficient genotyping bi-allelic SNPs on single cells☆155Updated 2 months ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 11 months ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 3 years ago
- ☆102Updated last month
- Genome-wide contact analysis using sklearn☆72Updated last year
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆12Updated 2 years ago