vdemichev / diann-rpackage
Report processing and protein quantification for MS-based proteomics
☆42Updated last year
Alternatives and similar repositories for diann-rpackage:
Users that are interested in diann-rpackage are comparing it to the libraries listed below
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆30Updated last month
- This is a collection of minimal code to visualize various aspects of proteomics data.☆75Updated 3 years ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆36Updated last month
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆53Updated this week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated last month
- R package - MSstats☆81Updated last week
- Differential Expression Analysis tool box R lang package for omics data☆44Updated 3 weeks ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆84Updated last week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆116Updated 10 months ago
- PDV: an integrative proteomics data viewer☆46Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆42Updated last week
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆24Updated 4 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆42Updated this week
- modular & open DIA search☆67Updated last week
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆43Updated 3 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆63Updated this week
- ☆58Updated 11 months ago
- TimsR: Easy access to timsTOF Pro data from R.☆10Updated 3 years ago
- The repo for LFQ-Analyst☆30Updated 8 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆12Updated 3 years ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆23Updated 2 weeks ago
- Deep learning framework for proteomics☆122Updated this week
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated last month
- Infrastructure of AlphaX ecosystem☆37Updated last week
- ☆24Updated 2 years ago
- ☆13Updated last year
- A tool for summarizing open search results☆16Updated this week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆32Updated last week