Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
☆111Sep 3, 2026Updated this week
Alternatives and similar repositories for MetaMorpheus
Users that are interested in MetaMorpheus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Construction, quantification, and visualization of proteoform families☆14Dec 16, 2024Updated last year
- Library for mass spectrometry projects☆28Updated this week
- A Python interface to proteomics data repositories☆39Jun 19, 2025Updated last year
- ☆37Updated this week
- Spectral library searching using approximate nearest neighbor techniques.☆51Feb 11, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Proteomics search & quantification so fast that it feels like magic☆307Jun 5, 2026Updated 2 months ago
- The Git Account of LCMSMethods.org☆11Jun 1, 2019Updated 7 years ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆143May 21, 2026Updated 3 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆56Updated this week
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆32Oct 5, 2022Updated 3 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Updated this week
- Deep learning framework for proteomics☆157Updated this week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆84Mar 26, 2026Updated 5 months ago
- A tool for summarizing open search results☆16May 5, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆56Updated this week
- ☆35Updated this week
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 5 years ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆51Updated this week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆67Aug 1, 2026Updated last month
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆129Jul 18, 2026Updated last month
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 3 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆132Mar 23, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Framework for IMS-MS Raw Data Processing written in Rust and Python.☆23Aug 28, 2026Updated last week
- Used to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.☆20Oct 23, 2025Updated 10 months ago
- R package - MSstats☆102Updated this week
- GlyCombo, a combinatorial glycan composition assignment tool☆13May 4, 2026Updated 4 months ago
- The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis …☆319Updated this week
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆246Jul 8, 2026Updated last month
- Democratizing ML in proteomics☆57Aug 27, 2026Updated last week
- TimsR: Easy access to timsTOF Pro data from R.☆12May 11, 2021Updated 5 years ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆15Jun 25, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A label free quantification tool.☆20Jan 13, 2026Updated 7 months ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆14Aug 20, 2026Updated 2 weeks ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Jul 7, 2026Updated last month
- Lorikeet is a JQuery plugin to view MS/MS spectra annotated with fragment ions.☆19Sep 7, 2023Updated 2 years ago
- ☆21Feb 14, 2025Updated last year
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆98Jun 3, 2026Updated 3 months ago
- ☆44Updated this week