smith-chem-wisc / MetaMorpheus
Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
☆95Updated this week
Alternatives and similar repositories for MetaMorpheus:
Users that are interested in MetaMorpheus are comparing it to the libraries listed below
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆80Updated 4 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆47Updated this week
- Rescoring and spectral library generation pipeline for proteomics.☆39Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆112Updated 8 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆115Updated this week
- Instrument Application Programming Interface☆45Updated last month
- Democratizing ML in proteomics☆34Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆41Updated last week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆59Updated 2 weeks ago
- ☆13Updated 11 months ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆20Updated 3 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆28Updated 2 weeks ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆48Updated last week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆81Updated 3 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 weeks ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆43Updated this week
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆202Updated this week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆78Updated 11 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆42Updated this week
- PDV: an integrative proteomics data viewer☆45Updated last month
- Deep learning framework for proteomics☆116Updated this week
- A Comet-based, best practices proteomics pipeline.☆35Updated 11 months ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆23Updated 3 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆71Updated 3 years ago
- DART-ID: retention time alignment and peptide identification confidence updates☆15Updated 2 years ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆34Updated 2 weeks ago
- Community-curated tutorials and datasets for ML in proteomics☆49Updated 3 months ago
- ☆58Updated 10 months ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆66Updated this week
- pathway and network analysis for metabolomics☆40Updated 9 months ago