Nesvilab / FragPipeLinks
A cross-platform proteomics data analysis suite
☆243Updated this week
Alternatives and similar repositories for FragPipe
Users that are interested in FragPipe are comparing it to the libraries listed below
Sorting:
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆120Updated last month
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆362Updated 2 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆83Updated 4 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆117Updated this week
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆221Updated last week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆58Updated 3 months ago
- Report processing and protein quantification for MS-based proteomics☆46Updated 2 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆80Updated 3 years ago
- PDV: an integrative proteomics data viewer☆51Updated 3 weeks ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆93Updated 3 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆101Updated this week
- A list of tools on proteomics using deep learning☆97Updated last year
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆88Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆52Updated last week
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆39Updated 5 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 5 months ago
- R package - MSstats☆84Updated last week
- Deep learning framework for proteomics☆129Updated 3 weeks ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 8 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆46Updated last week
- Navigation links (and brief descriptions) to my repositories.☆12Updated last month
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- Infrastructure of AlphaX ecosystem☆40Updated this week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆70Updated last week
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆11Updated 10 years ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆32Updated 3 months ago
- Create synthetic DIA LC-MS/MS for proteomics experiments☆15Updated 2 years ago