Alternatives and similar repositories for stitch

Users that are interested in stitch are comparing it to the libraries listed below

• snijderlab / annotator
  A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.
  ☆26Updated 3 weeks ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆40Updated last year
• gagneurlab / spectralis
  ☆14Updated 8 months ago
• pFindStudio / pGlyco3
  ☆20Updated 4 months ago
• lkytal / PepNet
  The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
  ☆35Updated 7 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 5 months ago
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆65Updated 3 weeks ago
• AmadeusloveIris / GraphNovo
  ☆15Updated last year
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆51Updated 2 weeks ago
• snijderlab / align-cli
  A CLI for pairwise alignment of sequences, using both normal and mass based alignment.
  ☆13Updated last week
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆44Updated 3 months ago
• mobiusklein / glycresoft
  An LC-MS/MS glycan and glycopeptide search engine
  ☆12Updated 5 months ago
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆56Updated 6 years ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆43Updated this week
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆54Updated 2 months ago
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆127Updated 3 weeks ago
• HUPO-PSI / ProForma
  HUPO-PSI Standardized peptidoform notation
  ☆19Updated last month
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated 2 weeks ago
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆38Updated this week
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆44Updated 4 months ago
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆25Updated 7 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆62Updated last year
• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆19Updated last week
• PayneLab / ProteomicsEducation
  ☆33Updated 3 weeks ago
• rusteomics / mzcore
  A Rust library for peptide centric mass spec calculations centered around ProForma and complex theoretical fragmentation
  ☆30Updated this week
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆20Updated last month
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆119Updated last month
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆58Updated 2 months ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated last week