Alternatives and similar repositories for stitch:

Users that are interested in stitch are comparing it to the libraries listed below

• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆38Updated 11 months ago
• gagneurlab / spectralis
  ☆13Updated 3 months ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆46Updated this week
• lkytal / PepNet
  The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
  ☆34Updated 3 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆37Updated this week
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated last month
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆49Updated 2 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆43Updated this week
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆26Updated last week
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆34Updated last week
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆58Updated 2 months ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 3 weeks ago
• AmadeusloveIris / GraphNovo
  ☆13Updated last year
• jessegmeyerlab / proteomics-tutorial
  ☆56Updated 8 months ago
• pFindStudio / pGlyco3
  ☆17Updated 4 months ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆79Updated 3 weeks ago
• MannLabs / alphadia
  modular & open DIA search
  ☆57Updated this week
• snijderlab / rustyms
  A rust library for parsing Pro Forma peptides and matching them against MS spectra
  ☆18Updated last week
• snijderlab / align-cli
  A CLI for pairwise alignment of sequences, using both normal and mass based alignment.
  ☆11Updated last week
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆40Updated last week
• compomics / ms2rescore
  Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
  ☆53Updated last week
• HUPO-PSI / ProForma
  HUPO-PSI Standardized peptidoform notation
  ☆15Updated 11 months ago
• cmb-chula / SMSNet
  ☆12Updated 7 months ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆64Updated this week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆34Updated 2 weeks ago
• SlavovLab / DART-ID
  DART-ID: retention time alignment and peptide identification confidence updates
  ☆15Updated last year
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆18Updated last year
• PayneLab / ProteomicsEducation
  ☆28Updated 5 months ago