cmb-chula / SMSNet
☆12Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for SMSNet
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆31Updated 8 months ago
- ☆10Updated last month
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆30Updated last week
- ☆12Updated last year
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆38Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆34Updated 2 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆45Updated this week
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆22Updated 3 weeks ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆55Updated last week
- Python package for investigating the structural context of PTMs☆27Updated 10 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆35Updated this week
- ☆53Updated 6 months ago
- A Comet-based, best practices proteomics pipeline.☆35Updated 7 months ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆18Updated this week
- Democratizing ML in proteomics☆28Updated 2 weeks ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆85Updated last year
- Rescoring and spectral library generation pipeline for proteomics.☆33Updated this week
- A Python interface to proteomics data repositories☆30Updated 6 months ago
- Community-curated tutorials and datasets for ML in proteomics☆47Updated 5 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆77Updated 7 months ago
- Spectral library searching using approximate nearest neighbor techniques.☆42Updated 3 months ago
- De novo peptide sequencing for DDA and DIA by deep learning☆30Updated 3 years ago
- MS/MS prediction for peptides☆22Updated 3 years ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆112Updated this week
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆41Updated 2 years ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆16Updated last month
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆32Updated last year
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆106Updated 4 months ago
- ☆32Updated this week