☆12Jun 13, 2024Updated last year
Alternatives and similar repositories for SMSNet
Users that are interested in SMSNet are comparing it to the libraries listed below
Sorting:
- ☆16Oct 1, 2024Updated last year
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆39Oct 30, 2024Updated last year
- ☆13Jan 7, 2026Updated last month
- ☆15Oct 16, 2023Updated 2 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Feb 23, 2024Updated 2 years ago
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆28Oct 15, 2024Updated last year
- Pytorch implementation of DeepNovoV2, a state-of-the-art de novo peptide sequencing model.☆27May 21, 2019Updated 6 years ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 2 years ago
- ☆15May 30, 2025Updated 9 months ago
- ☆42Jan 23, 2026Updated last month
- Paper collection about de novo peptide Sequening☆22Feb 5, 2025Updated last year
- Protein Identification with Deep Learning☆102Nov 27, 2020Updated 5 years ago
- The Interactive Peptide Spectral Annotator☆21Jun 9, 2020Updated 5 years ago
- HLA-I ligand predictor☆43Sep 24, 2025Updated 5 months ago
- A deep learning toolkit for mass spectrometry☆87Jan 7, 2026Updated last month
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆21Jan 12, 2026Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Feb 19, 2026Updated last week
- Proteomics Mass Spectrometry Datasets for Machine Learning☆21Aug 16, 2024Updated last year
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆177Updated this week
- Python package for efficient mass spectrometry data processing and visualization☆164Dec 18, 2025Updated 2 months ago
- A list of tools on proteomics using deep learning☆106May 5, 2024Updated last year
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- ☆31Feb 18, 2026Updated last week
- DeepLC: Retention time prediction for peptides carrying any modification.☆73Jan 13, 2026Updated last month
- R Shiny application "Vaccine Designer" aiming for the construction of vaccine sequences based on multi epitope design workflow.☆10Jun 25, 2024Updated last year
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆44Feb 17, 2026Updated last week
- ☆17Dec 4, 2025Updated 2 months ago
- De novo peptide sequencing for DDA and DIA by deep learning☆40Nov 26, 2020Updated 5 years ago
- Supporting code for Deep Neural Network or Dermatologist?☆10Nov 14, 2019Updated 6 years ago
- Estimation of isoelectric point of peptides and proteins using support vector machines (SVM).☆10Sep 10, 2016Updated 9 years ago
- Code of the all the data augmentation [ Based on our survey, that will soon be published ]☆10Jul 5, 2023Updated 2 years ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆14Jan 8, 2026Updated last month
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Feb 17, 2026Updated last week
- ☆10Mar 2, 2021Updated 4 years ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆113Dec 15, 2025Updated 2 months ago
- ☆38Feb 18, 2026Updated last week
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- A de novo modification detection tool that targets current features based on 004kit for prokaryotes☆22Jul 15, 2025Updated 7 months ago
- ☆10Oct 31, 2023Updated 2 years ago