MannLabs / ProteomicsVisualizationLinks
This is a collection of minimal code to visualize various aspects of proteomics data.
☆82Updated 3 years ago
Alternatives and similar repositories for ProteomicsVisualization
Users that are interested in ProteomicsVisualization are comparing it to the libraries listed below
Sorting:
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 3 weeks ago
- Report processing and protein quantification for MS-based proteomics☆48Updated 2 years ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆39Updated 6 months ago
- Imputing proteomics data using deep learning models☆28Updated 2 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆59Updated 3 weeks ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆73Updated 2 weeks ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 2 months ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆34Updated 5 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆95Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆56Updated last week
- Deep learning framework for proteomics☆131Updated 2 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆90Updated 3 weeks ago
- PDV: an integrative proteomics data viewer☆55Updated 2 months ago
- Infrastructure of AlphaX ecosystem☆43Updated last week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 6 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆48Updated 2 weeks ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆26Updated 9 months ago
- A list of tools on proteomics using deep learning☆105Updated last year
- R package - MSstats☆85Updated last week
- ☆65Updated last year
- A cross-platform proteomics data analysis suite☆250Updated this week
- modular & open DIA search☆75Updated last week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated last week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆118Updated this week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆80Updated last year
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated 2 weeks ago
- A collection of available Python tools for Proteomics analysis☆60Updated 6 years ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 2 weeks ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 2 weeks ago