HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-ProteomicsLinks
This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to provide contaminant protein FASTA and spectral libraries that can be universally applied to DDA and DIA proteomics and freely accessible for the proteomics community.
☆26Updated 9 months ago
Alternatives and similar repositories for Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
Users that are interested in Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics are comparing it to the libraries listed below
Sorting:
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated last week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆95Updated last week
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 2 weeks ago
- ☆65Updated last year
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 6 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 3 weeks ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Updated 3 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated 2 weeks ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 2 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 6 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆56Updated last week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆80Updated last year
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆102Updated 3 weeks ago
- asari, metabolomics data preprocessing☆53Updated last month
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆118Updated this week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated 3 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆59Updated 3 weeks ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 2 weeks ago
- Instrument Application Programming Interface☆50Updated 7 months ago
- A Python interface to proteomics data repositories☆35Updated 2 months ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆223Updated last week
- Report processing and protein quantification for MS-based proteomics☆48Updated 2 years ago
- ☆39Updated 6 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆45Updated 6 months ago
- TimsR: Easy access to timsTOF Pro data from R.☆12Updated 4 years ago
- ☆55Updated 4 years ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆47Updated 2 years ago
- Rescoring and spectral library generation pipeline for proteomics.☆48Updated 2 weeks ago
- Python package for investigating the structural context of PTMs☆28Updated 8 months ago