HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-ProteomicsLinks
This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to provide contaminant protein FASTA and spectral libraries that can be universally applied to DDA and DIA proteomics and freely accessible for the proteomics community.
☆25Updated 8 months ago
Alternatives and similar repositories for Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
Users that are interested in Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics are comparing it to the libraries listed below
Sorting:
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆93Updated 3 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆83Updated 4 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆47Updated 5 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆52Updated last week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆120Updated last month
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 2 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated last week
- ☆62Updated last year
- Report processing and protein quantification for MS-based proteomics☆46Updated 2 years ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆117Updated this week
- asari, metabolomics data preprocessing☆51Updated last week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆59Updated last month
- This is a collection of minimal code to visualize various aspects of proteomics data.☆80Updated 3 years ago
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 4 months ago
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- Rescoring and spectral library generation pipeline for proteomics.☆46Updated last week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 5 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆58Updated 3 months ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆46Updated last year
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆221Updated last week
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆101Updated this week
- pathway and network analysis for metabolomics☆42Updated last year
- TimsR: Easy access to timsTOF Pro data from R.☆10Updated 4 years ago
- Instrument Application Programming Interface☆48Updated 5 months ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆28Updated 2 years ago
- PDV: an integrative proteomics data viewer☆51Updated 3 weeks ago
- Democratizing ML in proteomics☆39Updated last week