HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-ProteomicsLinks
This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to provide contaminant protein FASTA and spectral libraries that can be universally applied to DDA and DIA proteomics and freely accessible for the proteomics community.
☆27Updated 11 months ago
Alternatives and similar repositories for Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
Users that are interested in Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics are comparing it to the libraries listed below
Sorting:
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 2 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 8 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated last week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆96Updated last month
- asari, metabolomics data preprocessing☆54Updated this week
- ☆66Updated last year
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated this week
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 3 weeks ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 3 months ago
- Python package for investigating the structural context of PTMs☆28Updated 9 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 7 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆59Updated 2 weeks ago
- Instrument Application Programming Interface☆51Updated 3 weeks ago
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆48Updated 2 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Updated 3 years ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆102Updated this week
- TimsR: Easy access to timsTOF Pro data from R.☆12Updated 4 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated this week
- Democratizing ML in proteomics☆43Updated 2 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last week
- ☆13Updated last year
- Rescoring and spectral library generation pipeline for proteomics.☆49Updated last week
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆40Updated 4 months ago
- Deep learning framework for proteomics☆132Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated this week
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆119Updated last month