HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-ProteomicsLinks
This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to provide contaminant protein FASTA and spectral libraries that can be universally applied to DDA and DIA proteomics and freely accessible for the proteomics community.
☆27Updated 10 months ago
Alternatives and similar repositories for Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
Users that are interested in Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics are comparing it to the libraries listed below
Sorting:
- asari, metabolomics data preprocessing☆54Updated this week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated last month
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 7 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 3 months ago
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆39Updated 3 months ago
- ☆65Updated last year
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆96Updated 2 weeks ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆57Updated 3 weeks ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated last week
- Rescoring and spectral library generation pipeline for proteomics.☆49Updated last week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 7 months ago
- Python package for investigating the structural context of PTMs☆28Updated 8 months ago
- Report processing and protein quantification for MS-based proteomics☆48Updated 2 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Updated 3 years ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆74Updated last month
- Democratizing ML in proteomics☆43Updated last month
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆47Updated 2 years ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated 2 weeks ago
- ☆41Updated 6 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated 2 months ago
- Deep learning framework for proteomics☆132Updated last month
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- Instrument Application Programming Interface☆51Updated last week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated last year
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆102Updated this week
- A Python interface to proteomics data repositories☆35Updated 3 months ago
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year