Quantitative proteomics workflow
☆16Sep 30, 2022Updated 3 years ago
Alternatives and similar repositories for IceR
Users that are interested in IceR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A reporting pipeline for visualization of immunopeptidomics MS data.☆16Nov 19, 2022Updated 3 years ago
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆34Jul 3, 2026Updated 3 weeks ago
- HUPO-PSI Standardized peptidoform notation☆25Jun 9, 2026Updated last month
- The repo for LFQ-Analyst☆31Aug 7, 2024Updated last year
- Proteomics Toolset for Integrative Data Analysis☆27Oct 7, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An R package to query EBI's Ontology Lookup Service (OLS)☆11Dec 10, 2025Updated 7 months ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆23Jun 19, 2026Updated last month
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Jun 5, 2026Updated last month
- Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments☆15Updated this week
- R-Shiny GUI integrated with the MSstats package family☆20Updated this week
- Report processing and protein quantification for MS-based proteomics☆56Jun 29, 2023Updated 3 years ago
- A Python package for peptide sequence analysis built around ProForma 2.1 notation. Calculate masses, generate fragments, predict isotopic…☆18Jul 10, 2026Updated 2 weeks ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17Jul 5, 2026Updated 3 weeks ago
- MHC class II binding prediction☆15Dec 27, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Apr 22, 2021Updated 5 years ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆41Jun 2, 2026Updated last month
- The Interactive Peptide Spectral Annotator☆23Jun 9, 2020Updated 6 years ago
- Dorothea package in Python☆11Apr 5, 2022Updated 4 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Updated this week
- Construction, quantification, and visualization of proteoform families☆14Dec 16, 2024Updated last year
- R package - MSstats☆98Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A deep learning toolkit for mass spectrometry☆95May 31, 2026Updated last month
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Apr 8, 2026Updated 3 months ago
- A label free quantification tool.☆20Jan 13, 2026Updated 6 months ago
- ☆14Jan 16, 2019Updated 7 years ago
- HOT regions paper☆11Jun 18, 2019Updated 7 years ago
- ☆10May 8, 2026Updated 2 months ago
- ☆12Sep 19, 2016Updated 9 years ago
- An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.☆27May 3, 2026Updated 2 months ago
- to keep myself motivated toward the daily habit of programming.☆11Sep 17, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆34Mar 21, 2026Updated 4 months ago
- Differential Expression Analysis tool box R lang package for omics data☆46Updated this week
- A unifying bioinformatics framework for organelle proteomics☆16Apr 22, 2026Updated 3 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆132Mar 23, 2026Updated 4 months ago
- A set of tools to annotate VCF files with expression and readcount data☆31Updated this week
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Jul 2, 2026Updated 3 weeks ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆128Jul 18, 2026Updated last week