Alternatives and similar repositories for IceR

Users that are interested in IceR are comparing it to the libraries listed below

• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆46Updated 2 weeks ago
• jessegmeyerlab / proteomics-tutorial
  ☆65Updated last year
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• CaronLab / MhcVizPipe
  A reporting pipeline for visualization of immunopeptidomics MS data.
  ☆13Updated 2 years ago
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 3 months ago
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆24Updated 5 months ago
• PayneLab / ProteomicsEducation
  ☆35Updated last month
• pwilmart / PAW_pipeline
  A Comet-based, best practices proteomics pipeline.
  ☆39Updated last year
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆16Updated this week
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆57Updated this week
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆21Updated last year
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆25Updated 3 months ago
• pFindStudio / pFind3
  ☆28Updated 7 months ago
• Vitek-Lab / MSstats
  R package - MSstats
  ☆85Updated last week
• tidymass / tidymass
  tidymass
  ☆57Updated last month
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆28Updated 2 years ago
• jpquast / protti
  Picotti lab data analysis package.
  ☆64Updated 5 months ago
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆39Updated 6 months ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated 2 years ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆15Updated 4 months ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated last week
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆47Updated 2 years ago
• nf-core / diaproteomics
  Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
  ☆19Updated 8 months ago
• JoachimGoedhart / VolcaNoseR
  Shiny app for making and annotating Volcano plots
  ☆24Updated last year
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆23Updated 3 months ago
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆13Updated 3 years ago
• nf-core / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆36Updated last year
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆55Updated 2 months ago