Quantitative proteomics workflow
☆15Sep 30, 2022Updated 3 years ago
Alternatives and similar repositories for IceR
Users that are interested in IceR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆33Nov 24, 2024Updated last year
- A reporting pipeline for visualization of immunopeptidomics MS data.☆15Nov 19, 2022Updated 3 years ago
- HUPO-PSI Standardized peptidoform notation☆24Apr 2, 2026Updated 2 weeks ago
- Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments☆13Apr 9, 2026Updated last week
- The repo for LFQ-Analyst☆30Aug 7, 2024Updated last year
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- High quality in silico spectral library generation for data-independent acquisition proteomics☆20Mar 31, 2026Updated 2 weeks ago
- An R package to query EBI's Ontology Lookup Service (OLS)☆11Dec 10, 2025Updated 4 months ago
- Proteomics Toolset for Integrative Data Analysis☆26Oct 7, 2025Updated 6 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Oct 2, 2025Updated 6 months ago
- Report processing and protein quantification for MS-based proteomics☆53Jun 29, 2023Updated 2 years ago
- R-Shiny GUI integrated with the MSstats package family☆20Updated this week
- A label free quantification tool.☆19Jan 13, 2026Updated 3 months ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Apr 22, 2021Updated 4 years ago
- MHC class II binding prediction☆15Dec 27, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Dorothea package in Python☆11Apr 5, 2022Updated 4 years ago
- Construction, quantification, and visualization of proteoform families☆14Dec 16, 2024Updated last year
- R package - MSstats☆96Apr 7, 2026Updated last week
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Apr 8, 2026Updated last week
- A deep learning toolkit for mass spectrometry☆89Jan 7, 2026Updated 3 months ago
- The Interactive Peptide Spectral Annotator☆22Jun 9, 2020Updated 5 years ago
- ☆14Jan 16, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- HOT regions paper☆11Jun 18, 2019Updated 6 years ago
- ☆10Mar 18, 2026Updated 3 weeks ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆43Updated this week
- ☆12Sep 19, 2016Updated 9 years ago
- An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.☆27Mar 17, 2025Updated last year
- Differential Expression Analysis tool box R lang package for omics data☆46Updated this week
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Mar 25, 2026Updated 3 weeks ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆128Mar 23, 2026Updated 3 weeks ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Feb 4, 2025Updated last year
- to keep myself motivated toward the daily habit of programming.☆11Sep 17, 2022Updated 3 years ago
- Libraries for fine isotopic structure calculator.☆42Mar 27, 2026Updated 2 weeks ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Dec 10, 2025Updated 4 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆33Mar 21, 2026Updated 3 weeks ago
- visual analysis of your VCF files☆40Dec 3, 2022Updated 3 years ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆16Mar 16, 2026Updated last month