MannLabs / alphamap
An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
☆79Updated this week
Alternatives and similar repositories for alphamap:
Users that are interested in alphamap are comparing it to the libraries listed below
- This is a collection of minimal code to visualize various aspects of proteomics data.☆71Updated 3 years ago
- Deep learning framework for proteomics☆116Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆64Updated 3 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆84Updated 2 months ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆31Updated this week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆44Updated this week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆58Updated 2 weeks ago
- modular & open DIA search☆60Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆112Updated 8 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆80Updated 4 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆37Updated 2 weeks ago
- Report processing and protein quantification for MS-based proteomics☆38Updated last year
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆24Updated 2 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆47Updated this week
- Python package for investigating the structural context of PTMs☆28Updated last month
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆19Updated 3 months ago
- Community-curated tutorials and datasets for ML in proteomics☆49Updated 2 months ago
- Democratizing ML in proteomics☆34Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆40Updated 3 weeks ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆43Updated this week
- ☆13Updated 11 months ago
- Instrument Application Programming Interface☆45Updated last week
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- ☆35Updated 3 weeks ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆32Updated 4 months ago
- Infrastructure of AlphaX ecosystem☆35Updated this week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated last year
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆26Updated last month
- A list of tools on proteomics using deep learning☆91Updated 9 months ago
- The Git Account of LCMSMethods.org☆11Updated 5 years ago