MannLabs / alphamap
An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
☆78Updated last week
Alternatives and similar repositories for alphamap:
Users that are interested in alphamap are comparing it to the libraries listed below
- This is a collection of minimal code to visualize various aspects of proteomics data.☆71Updated 3 years ago
- Deep learning framework for proteomics☆114Updated last week
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆82Updated last month
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆64Updated this week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆30Updated 8 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆58Updated last month
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆110Updated 6 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆80Updated 3 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆43Updated this week
- Python package for investigating the structural context of PTMs☆28Updated last week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆43Updated this week
- Rescoring and spectral library generation pipeline for proteomics.☆37Updated 2 weeks ago
- modular & open DIA search☆57Updated this week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆45Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆40Updated this week
- Instrument Application Programming Interface☆45Updated last month
- ☆56Updated 8 months ago
- Report processing and protein quantification for MS-based proteomics☆36Updated last year
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated last year
- Community-curated tutorials and datasets for ML in proteomics☆49Updated last month
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆34Updated 2 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆22Updated last month
- A list of tools on proteomics using deep learning☆90Updated 8 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated last month
- Infrastructure of AlphaX ecosystem☆33Updated this week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆78Updated 9 months ago
- ☆34Updated this week
- ☆13Updated 10 months ago
- Democratizing ML in proteomics☆33Updated this week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆124Updated last week