lkytal / PepNetLinks
The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
☆39Updated last year
Alternatives and similar repositories for PepNet
Users that are interested in PepNet are comparing it to the libraries listed below
Sorting:
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆82Updated 2 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Updated last year
- Deep learning framework for proteomics☆140Updated last week
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆50Updated 2 years ago
- A list of tools on proteomics using deep learning☆106Updated last year
- ☆67Updated last year
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆90Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated this week
- PDV: an integrative proteomics data viewer☆58Updated 5 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆123Updated this week
- DeepLC: Retention time prediction for peptides carrying any modification.☆72Updated 2 weeks ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated this week
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Updated 2 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Updated 3 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 10 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated last week
- De novo peptide sequencing for DDA and DIA by deep learning☆39Updated 5 years ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated 3 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated last week
- Democratizing ML in proteomics☆51Updated 3 weeks ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆104Updated last week
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆26Updated last month
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- Report processing and protein quantification for MS-based proteomics☆50Updated 2 years ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆35Updated 8 months ago
- A collection of available Python tools for Proteomics analysis☆65Updated 6 years ago
- Python package for investigating the structural context of PTMs☆28Updated 11 months ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆31Updated last year
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆42Updated 6 months ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆94Updated last year