lkytal / PepNetLinks
The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
☆39Updated 9 months ago
Alternatives and similar repositories for PepNet
Users that are interested in PepNet are comparing it to the libraries listed below
Sorting:
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆41Updated last year
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆80Updated last year
- Deep learning framework for proteomics☆131Updated last week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated last month
- A list of tools on proteomics using deep learning☆103Updated last year
- ☆64Updated last year
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated this week
- De novo peptide sequencing for DDA and DIA by deep learning☆36Updated 4 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆85Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆56Updated last week
- A collection of available Python tools for Proteomics analysis☆59Updated 6 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 6 months ago
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆23Updated 6 months ago
- PDV: an integrative proteomics data viewer☆54Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆45Updated 5 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆118Updated 3 weeks ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- Interpretation of proteomics identification results☆50Updated 2 weeks ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆81Updated 3 years ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆32Updated 4 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆59Updated last week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆95Updated last week
- ☆20Updated 6 months ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆89Updated 2 years ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 4 months ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆89Updated last year
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆47Updated 2 years ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 9 months ago
- Report processing and protein quantification for MS-based proteomics☆47Updated 2 years ago
- Rescoring and spectral library generation pipeline for proteomics.☆47Updated last week