The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
☆39Oct 30, 2024Updated last year
Alternatives and similar repositories for PepNet
Users that are interested in PepNet are comparing it to the libraries listed below
Sorting:
- ☆12Jun 13, 2024Updated last year
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Feb 23, 2024Updated 2 years ago
- ☆13Jan 7, 2026Updated last month
- ☆42Updated this week
- ☆15Oct 16, 2023Updated 2 years ago
- ☆16Oct 1, 2024Updated last year
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 2 years ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆177Updated this week
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆28Oct 15, 2024Updated last year
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Feb 18, 2026Updated last week
- Paper collection about de novo peptide Sequening☆22Feb 5, 2025Updated last year
- Spectral library searching using approximate nearest neighbor techniques.☆48Feb 11, 2026Updated 2 weeks ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆84Oct 23, 2025Updated 4 months ago
- A deep learning toolkit for mass spectrometry☆87Jan 7, 2026Updated last month
- ☆23Mar 15, 2024Updated last year
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Feb 17, 2026Updated 2 weeks ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆113Dec 15, 2025Updated 2 months ago
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆28Jan 27, 2026Updated last month
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- EasyPQP: Simple library generation for OpenSWATH☆11Updated this week
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- Report processing and protein quantification for MS-based proteomics☆52Jun 29, 2023Updated 2 years ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆16Feb 22, 2026Updated last week
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated last month
- A tool for large scale omics datasets evaluation☆23Jun 14, 2023Updated 2 years ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Aug 16, 2023Updated 2 years ago
- A list of tools on proteomics using deep learning☆106May 5, 2024Updated last year
- Package for analyzing MS with Python☆10Jan 11, 2018Updated 8 years ago
- GlyCombo, a combinatorial glycan composition assignment tool☆12Nov 16, 2025Updated 3 months ago
- A set of metabolomics tools for use in Galaxy☆11Sep 2, 2022Updated 3 years ago
- Confidence Estimation for Mass Spectrometry Proteomics☆13May 28, 2025Updated 9 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Feb 10, 2026Updated 3 weeks ago
- Python package for efficient mass spectrometry data processing and visualization☆164Dec 18, 2025Updated 2 months ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 3 years ago
- Workflow4Metabolomics meta repository☆11May 23, 2025Updated 9 months ago
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 3 months ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Aug 26, 2025Updated 6 months ago
- ☆15May 30, 2025Updated 9 months ago