lkytal / PepNetLinks
The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
☆39Updated last year
Alternatives and similar repositories for PepNet
Users that are interested in PepNet are comparing it to the libraries listed below
Sorting:
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆42Updated last year
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 8 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆122Updated 5 months ago
- A list of tools on proteomics using deep learning☆106Updated last year
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆89Updated 3 weeks ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆72Updated 2 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 9 months ago
- Deep learning framework for proteomics☆137Updated 3 weeks ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated 2 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated last month
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- De novo peptide sequencing for DDA and DIA by deep learning☆39Updated 5 years ago
- ☆66Updated last year
- PDV: an integrative proteomics data viewer☆58Updated 4 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated this week
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆31Updated last year
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆26Updated last month
- Democratizing ML in proteomics☆50Updated 3 weeks ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Updated 3 years ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆35Updated 7 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆32Updated last month
- Python package for investigating the structural context of PTMs☆28Updated 10 months ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆49Updated 2 years ago
- A collection of available Python tools for Proteomics analysis☆63Updated 6 years ago
- MS/MS prediction for peptides☆24Updated 4 years ago
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated last month
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆91Updated 2 years ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month