lkytal / PepNet
The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
☆34Updated 2 months ago
Alternatives and similar repositories for PepNet:
Users that are interested in PepNet are comparing it to the libraries listed below
- ☆56Updated 8 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆38Updated 10 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆58Updated last month
- De novo peptide sequencing for DDA and DIA by deep learning☆32Updated 4 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆78Updated last week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆78Updated 9 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆45Updated this week
- Deep learning framework for proteomics☆114Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆40Updated this week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆30Updated 8 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆37Updated 2 weeks ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆34Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated last month
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆80Updated 3 months ago
- Community-curated tutorials and datasets for ML in proteomics☆49Updated last month
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆22Updated 3 months ago
- Python package for investigating the structural context of PTMs☆28Updated last week
- Infrastructure of AlphaX ecosystem☆33Updated this week
- This is a collection of minimal code to visualize various aspects of proteomics data.☆71Updated 3 years ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆43Updated this week
- ☆13Updated 3 months ago
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆10Updated 9 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆110Updated 6 months ago
- A list of tools on proteomics using deep learning☆90Updated 8 months ago
- Report processing and protein quantification for MS-based proteomics☆36Updated last year
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆16Updated this week
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆34Updated 2 months ago
- ☆13Updated 10 months ago
- PDV: an integrative proteomics data viewer☆44Updated this week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆22Updated last month