ftwkoopmans / msdapLinks
MS-DAP: downstream analysis pipeline for quantitative proteomics
☆40Updated last week
Alternatives and similar repositories for msdap
Users that are interested in msdap are comparing it to the libraries listed below
Sorting:
- R package - MSstats☆89Updated last week
- Report processing and protein quantification for MS-based proteomics☆52Updated 2 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Updated 4 years ago
- Imputing proteomics data using deep learning models☆31Updated 2 months ago
- Differential Expression Analysis tool box R lang package for omics data☆47Updated last month
- PDV: an integrative proteomics data viewer☆59Updated 6 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated 3 weeks ago
- The repo for LFQ-Analyst☆30Updated last year
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆126Updated 3 weeks ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆67Updated 2 weeks ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆33Updated 2 weeks ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆92Updated 2 months ago
- Retrieving Information of Proteins from Uniprot☆72Updated last year
- tidymass☆60Updated 2 weeks ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- A Comet-based, best practices proteomics pipeline.☆39Updated last year
- ☆68Updated last year
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Updated 3 weeks ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆101Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆38Updated last year
- Methods for label-free mass spectrometry proteomics☆15Updated 10 months ago
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆47Updated 6 months ago
- A cross-platform proteomics data analysis suite☆276Updated this week
- Documentation is available here:☆24Updated last month
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆65Updated last month
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated last month
- R-Shiny GUI integrated with the MSstats package family☆19Updated this week
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆99Updated 5 months ago
- ☆24Updated 2 years ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated 6 months ago