ftwkoopmans / msdapLinks
MS-DAP: downstream analysis pipeline for quantitative proteomics
☆40Updated 6 months ago
Alternatives and similar repositories for msdap
Users that are interested in msdap are comparing it to the libraries listed below
Sorting:
- R package - MSstats☆86Updated last week
- Report processing and protein quantification for MS-based proteomics☆47Updated 2 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆81Updated 3 years ago
- Differential Expression Analysis tool box R lang package for omics data☆45Updated last week
- Imputing proteomics data using deep learning models☆27Updated last month
- The repo for LFQ-Analyst☆30Updated last year
- PDV: an integrative proteomics data viewer☆54Updated last month
- tidymass☆57Updated last week
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆24Updated 2 months ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated 2 weeks ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆120Updated 2 weeks ago
- Documentation is available here:☆18Updated last week
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆36Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated last month
- R package for analysing proteomics data☆49Updated 2 years ago
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆95Updated last week
- A comprehensive tutorial for proteomics data analysis in R that utilizes packages developed by researchers at PNNL and from Bioconductor.☆10Updated 3 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 5 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated last month
- Methods for label-free mass spectrometry proteomics☆15Updated 5 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆56Updated last week
- R-Shiny GUI integrated with the MSstats package family☆16Updated last week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆85Updated this week
- Mass spectrometry imaging toolbox☆62Updated 8 months ago
- Retrieving Information of Proteins from Uniprot☆68Updated last year
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆59Updated 4 months ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated 3 weeks ago
- ☆24Updated 2 years ago
- A Comet-based, best practices proteomics pipeline.☆38Updated last year