ftwkoopmans / msdapLinks
MS-DAP: downstream analysis pipeline for quantitative proteomics
☆40Updated 10 months ago
Alternatives and similar repositories for msdap
Users that are interested in msdap are comparing it to the libraries listed below
Sorting:
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Updated 4 years ago
- Report processing and protein quantification for MS-based proteomics☆50Updated 2 years ago
- R package - MSstats☆88Updated 2 months ago
- Imputing proteomics data using deep learning models☆31Updated last month
- Differential Expression Analysis tool box R lang package for omics data☆47Updated 2 weeks ago
- PDV: an integrative proteomics data viewer☆59Updated 5 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆32Updated 2 months ago
- The repo for LFQ-Analyst☆30Updated last year
- A Comet-based, best practices proteomics pipeline.☆39Updated last year
- MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.☆17Updated 4 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated 2 weeks ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆91Updated last month
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆124Updated 2 weeks ago
- R-Shiny GUI integrated with the MSstats package family☆18Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated this week
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆47Updated 5 months ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated 5 months ago
- Documentation is available here:☆21Updated last month
- tidymass☆59Updated 3 months ago
- ☆24Updated 2 years ago
- Retrieving Information of Proteins from Uniprot☆72Updated last year
- A cross-platform proteomics data analysis suite☆271Updated last week
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆99Updated 4 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated 3 months ago
- Analysis of co-fractionation MS datasets☆13Updated 4 years ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆25Updated 2 weeks ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated 3 weeks ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆37Updated last year
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆82Updated 2 months ago