ftwkoopmans / msdapLinks
MS-DAP: downstream analysis pipeline for quantitative proteomics
☆39Updated 3 months ago
Alternatives and similar repositories for msdap
Users that are interested in msdap are comparing it to the libraries listed below
Sorting:
- R package - MSstats☆83Updated this week
- Report processing and protein quantification for MS-based proteomics☆46Updated last year
- Differential Expression Analysis tool box R lang package for omics data☆45Updated 3 weeks ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆79Updated 3 years ago
- The repo for LFQ-Analyst☆30Updated 10 months ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆58Updated 2 months ago
- ☆62Updated last year
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 3 months ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 7 months ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated 3 months ago
- PDV: an integrative proteomics data viewer☆48Updated 2 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆49Updated 2 weeks ago
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆93Updated 2 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆119Updated last month
- Methods for label-free mass spectrometry proteomics☆15Updated 3 months ago
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 2 months ago
- An S3 data object and framework for common quantitative proteomic analyses☆41Updated 2 weeks ago
- R package for analysing proteomics data☆49Updated 2 years ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆87Updated 2 months ago
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆45Updated 5 months ago
- tidymass☆55Updated last month
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆34Updated last year
- Documentation is available here:☆17Updated this week
- A Comet-based, best practices proteomics pipeline.☆37Updated last year
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆24Updated last week
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated last week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated 3 months ago
- Mass spectrometry imaging toolbox☆58Updated 6 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated 3 months ago