MS-DAP: downstream analysis pipeline for quantitative proteomics
☆45May 9, 2026Updated last month
Alternatives and similar repositories for msdap
Users that are interested in msdap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jan 14, 2023Updated 3 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆85Jan 6, 2022Updated 4 years ago
- R package - MSstats☆98Updated this week
- MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.☆18Aug 19, 2025Updated 10 months ago
- Report processing and protein quantification for MS-based proteomics☆55Jun 29, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package for ECM molecule annotation, classification, and analysis☆14Sep 20, 2024Updated last year
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆16Mar 3, 2026Updated 3 months ago
- A Comet-based, best practices proteomics pipeline.☆39Mar 21, 2024Updated 2 years ago
- Rescoring and spectral library generation pipeline for proteomics.☆57Jun 19, 2026Updated last week
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆451Jun 18, 2026Updated last week
- The Interactive Peptide Spectral Annotator☆23Jun 9, 2020Updated 6 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆34Mar 21, 2026Updated 3 months ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Oct 12, 2021Updated 4 years ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analytical R Tools for Mass Spectrometry☆14Oct 30, 2025Updated 7 months ago
- Proteomics Toolset for Integrative Data Analysis☆26Oct 7, 2025Updated 8 months ago
- Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments☆14Apr 29, 2026Updated last month
- High quality in silico spectral library generation for data-independent acquisition proteomics☆22Jun 19, 2026Updated last week
- Peptide Correlation analysis☆11Oct 3, 2024Updated last year
- ☆15Jan 27, 2022Updated 4 years ago
- A cross-platform proteomics data analysis suite☆303Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆132Mar 23, 2026Updated 3 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Jun 5, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 2 years ago
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆30Mar 19, 2026Updated 3 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Jun 19, 2026Updated last week
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- Proteomics search & quantification so fast that it feels like magic☆297Jun 5, 2026Updated 3 weeks ago
- Layered enrichment analysis tool enables facile enrichment using various statistics at once.☆19Jun 10, 2026Updated 2 weeks ago
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆13Mar 13, 2022Updated 4 years ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆22Apr 28, 2026Updated 2 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆81Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A collection of available Python tools for Proteomics analysis☆68Jan 31, 2026Updated 4 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆41May 6, 2024Updated 2 years ago
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆102Mar 18, 2026Updated 3 months ago
- ☆10Aug 19, 2024Updated last year
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Jun 20, 2023Updated 3 years ago
- ☆12Apr 5, 2022Updated 4 years ago