Alternatives and similar repositories for triqler

Users that are interested in triqler are comparing it to the libraries listed below

• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆48Updated 6 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆48Updated 2 weeks ago
• gtluu / timsconvert
  ☆39Updated 6 months ago
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆26Updated 9 months ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆31Updated 6 months ago
• statisticalbiotechnology / quandenser
  QUANtification by Distillation for ENhanced Signals with Error Regulation
  ☆10Updated 3 years ago
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆59Updated 3 weeks ago
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆65Updated 2 years ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆95Updated last week
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆21Updated last month
• MannLabs / timsrust
  ☆28Updated 3 months ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆50Updated 7 months ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆35Updated 2 months ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆54Updated last week
• CompOmics / moFF
  A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
  ☆33Updated 4 years ago
• Nesvilab / PTM-Shepherd
  A tool for summarizing open search results
  ☆16Updated last month
• jessegmeyerlab / proteomics-tutorial
  ☆65Updated last year
• MannLabs / ProteomicsVisualization
  This is a collection of minimal code to visualize various aspects of proteomics data.
  ☆82Updated 3 years ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆48Updated 2 weeks ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆56Updated last week
• MatteoLacki / timspy
  ☆20Updated 4 years ago
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆48Updated 2 years ago
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆121Updated 2 months ago
• CompOmics / ms2rescore
  Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
  ☆61Updated 3 months ago
• Vitek-Lab / MSstats
  R package - MSstats
  ☆85Updated last week
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆45Updated 6 months ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆86Updated 3 weeks ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated last month