Alternatives and similar repositories for triqler:

Users that are interested in triqler are comparing it to the libraries listed below

• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated 2 months ago
• statisticalbiotechnology / quandenser
  QUANtification by Distillation for ENhanced Signals with Error Regulation
  ☆10Updated 2 years ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated this week
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated last month
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆24Updated 5 months ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆30Updated 2 months ago
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆43Updated this week
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆20Updated last week
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆43Updated last month
• kusterlab / universal_spectrum_explorer
  ☆15Updated 3 years ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆44Updated this week
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 3 months ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆10Updated 3 years ago
• gtluu / timsconvert
  ☆37Updated last month
• MatteoLacki / timspy
  ☆20Updated 3 years ago
• MannLabs / timsrust
  ☆26Updated last week
• mafreitas / tdf2mzml
  ☆26Updated last year
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆48Updated this week
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆44Updated last month
• Nesvilab / PTM-Shepherd
  A tool for summarizing open search results
  ☆16Updated this week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆36Updated 2 weeks ago
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆24Updated 3 weeks ago
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆44Updated 3 months ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆54Updated 2 weeks ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆46Updated 2 months ago
• CaronLab / MhcVizPipe
  A reporting pipeline for visualization of immunopeptidomics MS data.
  ☆12Updated 2 years ago
• bigbio / pmultiqc
  A library for QC report based on MultiQC framework
  ☆14Updated last week