The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
☆26Apr 13, 2026Updated last month
Alternatives and similar repositories for triqler
Users that are interested in triqler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆24Apr 8, 2026Updated last month
- Fast and flexible semi-supervised learning for peptide detection in Python☆51Feb 27, 2025Updated last year
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Mar 25, 2026Updated 2 months ago
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Synthetic mzML writer☆14Mar 10, 2025Updated last year
- A library for QC report based on MultiQC framework☆32May 7, 2026Updated 2 weeks ago
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆33Nov 24, 2024Updated last year
- Data Processing Kitchen Sink for proteomics data☆13May 18, 2026Updated last week
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆127Apr 19, 2026Updated last month
- ☆15Apr 27, 2022Updated 4 years ago
- Peptide Correlation analysis☆11Oct 3, 2024Updated last year
- The Interactive Peptide Spectral Annotator☆23Jun 9, 2020Updated 5 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆33Mar 21, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Proteomics search & quantification so fast that it feels like magic☆289May 8, 2026Updated 2 weeks ago
- A Python interface to proteomics data repositories☆37Jun 19, 2025Updated 11 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆71Jan 6, 2026Updated 4 months ago
- HUPO-PSI mass spectrometry CV☆41Apr 24, 2026Updated last month
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆45Jun 27, 2022Updated 3 years ago
- Core Utils for Mass Spectrometry Data☆17May 11, 2026Updated 2 weeks ago
- Robust statistical inference for quantitative LC-MS proteomics☆33Dec 6, 2022Updated 3 years ago
- Quantitative proteomics workflow☆16Sep 30, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Community-curated tutorials and datasets for ML in proteomics☆59Oct 31, 2025Updated 6 months ago
- Libraries for fine isotopic structure calculator.☆43Mar 27, 2026Updated last month
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15May 8, 2026Updated 2 weeks ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 5 years ago
- A reporting pipeline for visualization of immunopeptidomics MS data.☆16Nov 19, 2022Updated 3 years ago
- ☆15Jan 27, 2022Updated 4 years ago
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆13Mar 13, 2022Updated 4 years ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆31Oct 5, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A label free quantification tool.☆19Jan 13, 2026Updated 4 months ago
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated last year
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆48Updated this week
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated 10 months ago
- ☆46Mar 14, 2025Updated last year
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆61Feb 10, 2026Updated 3 months ago
- CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction☆21Updated this week