AutoRT: Peptide retention time prediction using deep learning
☆32Jul 31, 2024Updated 2 years ago
Alternatives and similar repositories for AutoRT
Users that are interested in AutoRT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 9 years ago
- PepQuery: a targeted peptide search engine☆16May 1, 2024Updated 2 years ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆24Oct 7, 2026Updated 3 weeks ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 3 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆67Oct 9, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This is a R package for alignment of DIA mass-spec data☆12Jan 31, 2026Updated 8 months ago
- ☆24Feb 26, 2023Updated 3 years ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆144May 21, 2026Updated 5 months ago
- A list of tools on proteomics using deep learning☆111May 14, 2026Updated 5 months ago
- source code of passatuto by Kerstin Scheubert☆10Jan 20, 2017Updated 9 years ago
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 4 years ago
- PDV: an integrative proteomics data viewer☆68Sep 22, 2026Updated last month
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆52Nov 18, 2021Updated 4 years ago
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆41Jun 10, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆18Oct 21, 2026Updated last week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆56Updated this week
- DeepLC: Retention time prediction for peptides carrying any modification.☆80Updated this week
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Sep 1, 2026Updated last month
- Lorikeet is a JQuery plugin to view MS/MS spectra annotated with fragment ions.☆19Sep 7, 2023Updated 3 years ago
- Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein seq…☆19Oct 4, 2022Updated 4 years ago
- ☆37Oct 5, 2026Updated 3 weeks ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆69Oct 12, 2026Updated 2 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆204Updated this week
- Multi-Omics Peptide Generator☆33Nov 6, 2025Updated 11 months ago
- ☆17Oct 22, 2026Updated last week
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆29Aug 16, 2023Updated 3 years ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 5 years ago
- Confidence Estimation for Mass Spectrometry Proteomics☆17Sep 17, 2026Updated last month
- data processing for MS-based metabolomics☆15May 28, 2026Updated 5 months ago
- ☆14Feb 11, 2020Updated 6 years ago
- RawQuant is a Python package for extracting scan meta data and quantification values from Thermo .raw files.☆11Jan 4, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Shiny app for retention time prediction☆11Dec 1, 2025Updated 10 months ago
- ☆12Jun 13, 2024Updated 2 years ago
- An extension of the ProteoWizard framework enabling the support of the mzDB format☆14Feb 12, 2021Updated 5 years ago
- Python package for efficient mass spectrometry data processing and visualization☆169Aug 18, 2026Updated 2 months ago
- A Bioconductor R package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics☆16Oct 13, 2026Updated 2 weeks ago
- Collisional cross-section prediction for modified and multiconformational peptides☆15Aug 26, 2026Updated 2 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆48Oct 23, 2026Updated last week