Alternatives and similar repositories for AutoRT

Users that are interested in AutoRT are comparing it to the libraries listed below

• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆47Updated 8 months ago
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆81Updated last month
• nh2tran / DeepNovo-DIA
  De novo peptide sequencing for DDA and DIA by deep learning
  ☆39Updated 5 years ago
• CompOmics / IM2Deep
  Collisional cross-section prediction for modified and multiconformational peptides
  ☆13Updated 3 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆49Updated 9 months ago
• lkytal / PepNet
  The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
  ☆39Updated last year
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 4 years ago
• bittremieuxlab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆26Updated 2 years ago
• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆21Updated last week
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆35Updated 7 months ago
• Nesvilab / IonQuant
  A label free quantification tool.
  ☆18Updated 5 months ago
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 3 years ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆12Updated 4 years ago
• xia-lab / OptiLCMS
  R package for optimized LC-MS spectra processing
  ☆26Updated this week
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆36Updated 5 months ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆53Updated this week
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆64Updated this week
• bittremieuxlab / ANN-SoLo
  Spectral library searching using approximate nearest neighbor techniques.
  ☆47Updated 7 months ago
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆58Updated 4 months ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆42Updated last year
• verilylifesciences / deepmass
  DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.
  ☆51Updated 4 years ago
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆49Updated 2 years ago
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆72Updated 2 months ago
• PRIDE-Archive / pridepy
  Python client for PRIDE Archive Rest API.
  ☆26Updated last month
• CompOmics / ms2rescore
  Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
  ☆61Updated last month
• pFindStudio / pGlyco3
  ☆20Updated 9 months ago
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 10 months ago
• CaronLab / MhcVizPipe
  A reporting pipeline for visualization of immunopeptidomics MS data.
  ☆15Updated 3 years ago