bzhanglab / AutoRTLinks
AutoRT: Peptide retention time prediction using deep learning
☆30Updated last year
Alternatives and similar repositories for AutoRT
Users that are interested in AutoRT are comparing it to the libraries listed below
Sorting:
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated last week
- Collisional cross-section prediction for modified and multiconformational peptides☆13Updated this week
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Updated 2 years ago
- MS/MS prediction for peptides☆24Updated 5 years ago
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆39Updated last year
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Updated last year
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 10 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆83Updated 2 months ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Updated 3 years ago
- De novo peptide sequencing for DDA and DIA by deep learning☆39Updated 5 years ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- EasyPQP: Simple library generation for OpenSWATH☆11Updated last week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆35Updated 9 months ago
- Python package for investigating the structural context of PTMs☆28Updated last year
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated this week
- A Python interface to proteomics data repositories☆36Updated 7 months ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆72Updated this week
- TimsR: Easy access to timsTOF Pro data from R.☆12Updated 4 years ago
- Graphical user interface for de novo sequencing of tandem mass spectra☆15Updated last year
- ☆21Updated 11 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated last week
- Spectral library searching using approximate nearest neighbor techniques.☆48Updated 8 months ago
- pathway and network analysis for metabolomics☆43Updated last month
- A reporting pipeline for visualization of immunopeptidomics MS data.☆15Updated 3 years ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆21Updated last week
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆55Updated last month
- A label free quantification tool.☆18Updated this week
- Public Workflows at GNPS☆64Updated last year
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated last week
- ☆22Updated 4 years ago