Alternatives and similar repositories for AutoRT:

Users that are interested in AutoRT are comparing it to the libraries listed below

• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated last month
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆42Updated 3 weeks ago
• nh2tran / DeepNovo-DIA
  De novo peptide sequencing for DDA and DIA by deep learning
  ☆32Updated 4 years ago
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated this week
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• lkytal / PepNet
  The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
  ☆35Updated 5 months ago
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆45Updated 2 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆58Updated 10 months ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆41Updated this week
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆32Updated last month
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated 3 weeks ago
• kusterlab / universal_spectrum_explorer
  ☆15Updated 3 years ago
• Nesvilab / DIA-Umpire
  Computational analysis for mass spectrometry-based proteomics data
  ☆20Updated last year
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆79Updated last year
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆24Updated last year
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• bigbio / py-pgatk
  Python tools for proteogenomics analysis toolkit
  ☆13Updated 11 months ago
• Nesvilab / PTM-Shepherd
  A tool for summarizing open search results
  ☆16Updated 2 weeks ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆47Updated this week
• bittremieux-lab / ANN-SoLo
  Spectral library searching using approximate nearest neighbor techniques.
  ☆42Updated last week
• markmipt / ms1searchpy
  ☆10Updated last week
• compomics / peptide-shaker
  Interpretation of proteomics identification results
  ☆48Updated 3 months ago
• compomics / denovogui
  Graphical user interface for de novo sequencing of tandem mass spectra
  ☆14Updated last year
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆83Updated this week
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆9Updated 3 years ago
• HUPO-PSI / mzQC
  Reporting and exchange format for mass spectrometry quality control data
  ☆29Updated 2 weeks ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆40Updated last week
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• mafreitas / tdf2mzml
  ☆26Updated last year
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆62Updated this week