An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Institute of Biochemistry.
☆28Mar 19, 2026Updated 3 weeks ago
Alternatives and similar repositories for pydiaid
Users that are interested in pydiaid are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆37Mar 18, 2026Updated 3 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆94Mar 18, 2026Updated 3 weeks ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Jan 6, 2022Updated 4 years ago
- ☆10Mar 2, 2021Updated 5 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆92Nov 17, 2025Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆61Mar 19, 2026Updated 3 weeks ago
- ☆13Aug 20, 2020Updated 5 years ago
- Python package for investigating the structural context of PTMs☆28Jan 9, 2025Updated last year
- An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.☆27Mar 17, 2025Updated last year
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆187Apr 19, 2024Updated last year
- An open-source Python package to unify raw MS data accession and storage.☆31Updated this week
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆16Mar 16, 2026Updated 3 weeks ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆86Nov 21, 2025Updated 4 months ago
- Deep learning framework for proteomics☆149Updated this week
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆15Jan 27, 2022Updated 4 years ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆436Feb 5, 2026Updated 2 months ago
- ☆31May 24, 2022Updated 3 years ago
- Report processing and protein quantification for MS-based proteomics☆53Jun 29, 2023Updated 2 years ago
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆15Jan 17, 2026Updated 2 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Apr 7, 2026Updated last week
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated 2 weeks ago
- Fundamental functions, annotation pipeline and constants for oktoberfest☆13Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Data Processing Kitchen Sink for proteomics data☆13Updated this week
- Analysis workflow for investigating the structural context of PTMs☆11Jan 8, 2024Updated 2 years ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆43Jan 25, 2026Updated 2 months ago
- Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets☆14Nov 21, 2025Updated 4 months ago
- An open-source prediction framework for peptide ion collision cross section (CCS) values with python.☆15Oct 6, 2023Updated 2 years ago
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- Rescoring and spectral library generation pipeline for proteomics.☆55Updated this week
- MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.☆18Aug 19, 2025Updated 7 months ago
- A cross-platform proteomics data analysis suite☆286Updated this week
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆28May 20, 2025Updated 10 months ago
- pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.☆25Jan 11, 2025Updated last year
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆12Feb 8, 2021Updated 5 years ago
- This is the public repository for the EPIC tool.☆19Aug 3, 2022Updated 3 years ago
- Linux programming environment course in Chinese☆12Nov 19, 2017Updated 8 years ago
- ALD study data analysis☆13Feb 16, 2023Updated 3 years ago
- A collection of available Python tools for Proteomics analysis☆67Jan 31, 2026Updated 2 months ago