R-Shiny GUI integrated with the MSstats package family
☆20Jul 16, 2026Updated this week
Alternatives and similar repositories for MSstatsShiny
Users that are interested in MSstatsShiny are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Documentation is available here:☆26Jun 10, 2026Updated last month
- Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments☆15Apr 29, 2026Updated 2 months ago
- R package - MSstats☆98Updated this week
- Converter functions for the MSstats package☆11Updated this week
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Apr 16, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Bioconductor/R package for longitudinal system suitability monitoring and quality control for proteomic experiments☆10Feb 7, 2026Updated 5 months ago
- ☆11Aug 10, 2023Updated 2 years ago
- Quantitative proteomics workflow☆16Sep 30, 2022Updated 3 years ago
- The repo for LFQ-Analyst☆31Aug 7, 2024Updated last year
- A tool for summarizing open search results☆16May 5, 2026Updated 2 months ago
- ☆16Oct 3, 2023Updated 2 years ago
- Report processing and protein quantification for MS-based proteomics☆55Jun 29, 2023Updated 3 years ago
- RawQuant is a Python package for extracting scan meta data and quantification values from Thermo .raw files.☆11Jan 4, 2019Updated 7 years ago
- Data Processing Kitchen Sink for proteomics data☆14Jun 15, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆14Jul 12, 2024Updated 2 years ago
- Shiny ClinVar web server source code☆12Apr 29, 2019Updated 7 years ago
- An R/Bioconductor package to identify higher-order molecular phenotypes☆19Jan 15, 2024Updated 2 years ago
- ProXL Web App -- Visualize and Share Protein Cross-linking Data☆13Jul 10, 2026Updated last week
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆128Updated this week
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated last year
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆50Oct 13, 2025Updated 9 months ago
- A reporting pipeline for visualization of immunopeptidomics MS data.☆16Nov 19, 2022Updated 3 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆34Mar 21, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆22Updated this week
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆34Jul 3, 2026Updated 2 weeks ago
- This repository contains the installation zip file, user manual, example data, and source code for the PyXlinkViewer plugin for PyMOL v2☆10Jul 3, 2023Updated 3 years ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆22Apr 28, 2026Updated 2 months ago
- Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…☆22Mar 25, 2026Updated 3 months ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆12Mar 11, 2020Updated 6 years ago
- Additional supplementary information and code, data repository for Fellows Yates, J.A. et al. (2021) PNAS. DOI: http://dx.doi.org/10.1073…☆13Oct 20, 2021Updated 4 years ago
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆26May 23, 2026Updated last month
- Phylogenetic profiling with orthology data☆13Jul 9, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆55Updated this week
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆105Updated this week
- CRISPR, faster, better – The Crackling method for whole-genome target detection☆11Jan 11, 2024Updated 2 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆94Nov 17, 2025Updated 8 months ago