Alternatives and similar repositories for MSstatsShiny:

Users that are interested in MSstatsShiny are comparing it to the libraries listed below

• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆44Updated 3 weeks ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆28Updated 3 months ago
• pnnl / leapR
  ☆17Updated 2 months ago
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆29Updated 6 months ago
• broadinstitute / protigy
  Proteomics Toolset for Integrative Data Analysis
  ☆22Updated last year
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated last year
• MASHUOA / HiTMaP
  An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics
  ☆18Updated 3 weeks ago
• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆22Updated 4 months ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆27Updated this week
• statOmics / msqrob2
  Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure
  ☆10Updated this week
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆23Updated 2 months ago
• mathiaskalxdorf / IceR
  Quantitative proteomics workflow
  ☆15Updated 2 years ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆40Updated last month
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆24Updated last year
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆33Updated 3 years ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated last year
• tbaccata / amica
  amica: an interactive and user-friendly web-based platform for the analysis of proteomics data
  ☆24Updated 2 months ago
• MonashProteomics / FragPipe-Analyst
  ☆16Updated last week
• cox-labs / PerseusR
  R package for easy interop between Perseus and R
  ☆13Updated 2 years ago
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆32Updated this week
• DavisLaboratory / msImpute
  Methods for label-free mass spectrometry proteomics
  ☆14Updated this week
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆12Updated 2 years ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆27Updated last year
• Vitek-Lab / MSstats
  R package - MSstats
  ☆79Updated 3 weeks ago
• SlavovLab / DO-MS
  An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
  ☆25Updated 7 months ago
• arnesmits / DEP
  DEP package
  ☆28Updated 2 years ago
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆18Updated last year
• tidymass / tidymass
  tidymass
  ☆54Updated last year
• Nesvilab / TMT-Integrator
  A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.
  ☆12Updated 6 months ago
• UCLouvain-CBIO / scp
  Single cell proteomics data processing
  ☆25Updated this week