Nesvilab / philosopherLinks
PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
☆117Updated this week
Alternatives and similar repositories for philosopher
Users that are interested in philosopher are comparing it to the libraries listed below
Sorting:
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆87Updated 2 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆119Updated last month
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- PDV: an integrative proteomics data viewer☆48Updated 2 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆49Updated 2 weeks ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated 2 weeks ago
- A cross-platform proteomics data analysis suite☆237Updated this week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆58Updated 2 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated 2 years ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆212Updated last week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 3 months ago
- ☆62Updated last year
- This is a collection of minimal code to visualize various aspects of proteomics data.☆79Updated 3 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated 3 months ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆52Updated 3 years ago
- Report processing and protein quantification for MS-based proteomics☆46Updated last year
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆39Updated 4 months ago
- ☆13Updated last year
- R package - MSstats☆83Updated this week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆65Updated 2 weeks ago
- Interpretation of proteomics identification results☆48Updated 2 months ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 7 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆43Updated this week
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆98Updated this week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 2 months ago
- ☆24Updated 2 years ago
- De novo peptide sequencing for DDA and DIA by deep learning☆34Updated 4 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆44Updated 3 months ago
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆45Updated 5 months ago