Nesvilab / philosopher
PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
☆115Updated last week
Alternatives and similar repositories for philosopher:
Users that are interested in philosopher are comparing it to the libraries listed below
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆112Updated 8 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆80Updated 4 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆78Updated 10 months ago
- A cross-platform proteomics data analysis suite☆218Updated this week
- PDV: an integrative proteomics data viewer☆45Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆47Updated this week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆44Updated this week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆79Updated this week
- This is a collection of minimal code to visualize various aspects of proteomics data.☆71Updated 3 years ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆201Updated last month
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆35Updated this week
- ☆56Updated 9 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆37Updated 2 weeks ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated last year
- Report processing and protein quantification for MS-based proteomics☆38Updated last year
- Interpretation of proteomics identification results☆48Updated 2 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆25Updated 2 months ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆32Updated 4 months ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆23Updated 2 months ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆92Updated this week
- A collection of available Python tools for Proteomics analysis☆52Updated 5 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆33Updated 9 months ago
- Community-curated tutorials and datasets for ML in proteomics☆49Updated 2 months ago
- Deep learning framework for proteomics☆116Updated this week
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆35Updated 3 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆58Updated 2 weeks ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆124Updated 3 weeks ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆52Updated 3 years ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆64Updated 3 weeks ago
- ☆13Updated 11 months ago