Nesvilab / philosopherLinks
PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
☆121Updated 2 weeks ago
Alternatives and similar repositories for philosopher
Users that are interested in philosopher are comparing it to the libraries listed below
Sorting:
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated 2 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆123Updated 5 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆82Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated last week
- PDV: an integrative proteomics data viewer☆58Updated 5 months ago
- A cross-platform proteomics data analysis suite☆268Updated this week
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆104Updated 3 weeks ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆66Updated last week
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆232Updated last month
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆31Updated last year
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆90Updated last month
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated last month
- Report processing and protein quantification for MS-based proteomics☆50Updated 2 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆32Updated 2 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 9 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Updated 3 years ago
- ☆67Updated last year
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆92Updated 2 weeks ago
- R package - MSstats☆88Updated 2 months ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Updated 4 months ago
- ☆24Updated 2 years ago
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated this week
- A library for QC report based on MultiQC framework☆24Updated this week
- A list of tools on proteomics using deep learning☆106Updated last year
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆50Updated this week
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 2 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated this week
- Deep learning framework for proteomics☆140Updated this week