Nesvilab / MSFraggerLinks
Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
☆121Updated 3 months ago
Alternatives and similar repositories for MSFragger
Users that are interested in MSFragger are comparing it to the libraries listed below
Sorting:
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated 2 months ago
- A cross-platform proteomics data analysis suite☆261Updated this week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 2 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Updated 3 years ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆119Updated last month
- A list of tools on proteomics using deep learning☆106Updated last year
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆96Updated last month
- Deep learning framework for proteomics☆132Updated last month
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆226Updated this week
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆90Updated 2 months ago
- Report processing and protein quantification for MS-based proteomics☆49Updated 2 years ago
- Democratizing ML in proteomics☆43Updated 2 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆49Updated last week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated last week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated this week
- modular & open DIA search☆80Updated this week
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆102Updated this week
- PDV: an integrative proteomics data viewer☆57Updated 3 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆59Updated 2 weeks ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated this week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated this week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆27Updated 11 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 8 months ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆388Updated last month
- ☆13Updated last year
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆74Updated last month
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated this week
- Infrastructure of AlphaX ecosystem☆44Updated 2 weeks ago