Nesvilab / MSFraggerLinks
Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
☆119Updated 2 weeks ago
Alternatives and similar repositories for MSFragger
Users that are interested in MSFragger are comparing it to the libraries listed below
Sorting:
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated 3 months ago
- A cross-platform proteomics data analysis suite☆239Updated this week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆58Updated 2 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆117Updated last week
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆214Updated 3 weeks ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆88Updated 2 weeks ago
- Rescoring and spectral library generation pipeline for proteomics.☆43Updated this week
- Report processing and protein quantification for MS-based proteomics☆46Updated 2 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆79Updated 3 years ago
- Democratizing ML in proteomics☆37Updated 3 weeks ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆89Updated 3 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated 2 weeks ago
- Deep learning framework for proteomics☆128Updated this week
- A list of tools on proteomics using deep learning☆97Updated last year
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated 2 years ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆355Updated last month
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆59Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 4 months ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆101Updated 2 weeks ago
- Instrument Application Programming Interface☆47Updated 5 months ago
- PDV: an integrative proteomics data viewer☆51Updated 3 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆66Updated last month
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 7 months ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆86Updated last year
- modular & open DIA search☆73Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆51Updated last month
- Fast and flexible semi-supervised learning for peptide detection in Python☆47Updated 4 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month