Alternatives and similar repositories for universal_spectrum_explorer:

Users that are interested in universal_spectrum_explorer are comparing it to the libraries listed below

• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆21Updated last month
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆19Updated this week
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆37Updated last week
• wilhelm-lab / dlomix
  Python framework for Deep Learning in Proteomics
  ☆23Updated this week
• gtluu / timsconvert
  ☆35Updated 2 weeks ago
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆40Updated 3 weeks ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated 2 months ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆44Updated this week
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆26Updated 3 weeks ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆24Updated 2 months ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆34Updated last week
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆43Updated this week
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆20Updated 2 months ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆47Updated this week
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆45Updated this week
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆18Updated last year
• mafreitas / tdf2mzml
  ☆25Updated last year
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆80Updated 4 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated last month
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆42Updated this week
• Nesvilab / PTM-Shepherd
  A tool for summarizing open search results
  ☆15Updated this week
• statisticalbiotechnology / quandenser
  QUANtification by Distillation for ENhanced Signals with Error Regulation
  ☆10Updated 2 years ago
• jessegmeyerlab / proteomics-tutorial
  ☆56Updated 9 months ago
• MannLabs / timsrust
  ☆25Updated last week
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆32Updated 9 months ago
• Protea-Glycosciences / GlyCombo
  GlyCombo, a combinatorial glycan composition assignment tool
  ☆12Updated last month
• statisticalbiotechnology / diffacto
  ☆13Updated 10 months ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• HUPO-PSI / mzTab
  mzTab Reporting MS-based Proteomics and Metabolomics Results
  ☆39Updated 3 months ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆34Updated this week