danknights / mwasLinks
Perform microbiome-wide association studies with a variety of models
☆18Updated 8 years ago
Alternatives and similar repositories for mwas
Users that are interested in mwas are comparing it to the libraries listed below
Sorting:
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 4 months ago
- Lesson on data analysis and visualization in R for genomics☆43Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- RNAsik - more than just a pipeline☆13Updated last year
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 3 years ago
- Talk to the NCBI EUtils☆22Updated 5 years ago
- ☆12Updated 8 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Introduction to the Command Line for Genomics☆67Updated last week
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 6 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- Project Organization and Management for Genomics☆25Updated last week
- Genomics Workshop Overview☆48Updated this week
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Updated 10 years ago
- Microbiota Analysis in R Easily☆12Updated 3 years ago
- ClusterScan, search for clusters of features in a given annotation.☆11Updated 4 years ago
- An interactive web application for demonstrating and using phyloseq.☆60Updated 6 years ago
- Pipelines for NGS, imputation, gwas, ...☆28Updated 5 years ago
- Development version of the biom package for R☆24Updated 4 years ago
- fastqcr: Quality Control of Sequencing Data☆75Updated 2 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46Updated last month