danknights / mwas
Perform microbiome-wide association studies with a variety of models
☆16Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for mwas
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆29Updated last year
- A comprehensive and customizable R package for microbiome analysis.☆21Updated last year
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated last year
- tidyMicro GitHup Repository☆18Updated 3 years ago
- Microbiome research☆20Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆22Updated 9 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 5 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- ☆12Updated 7 years ago
- Talk to the NCBI EUtils☆20Updated 4 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated 6 months ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 11 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 4 years ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Updated 8 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆17Updated 11 months ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆20Updated 2 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 7 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 5 years ago
- Microbiota Analysis in R Easily☆11Updated 2 years ago
- Fast alignment-free pangenome creation and exploration☆27Updated 4 years ago
- A very simple BLAST filtering pipeline☆18Updated 10 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆18Updated 7 years ago
- RNAsik - more than just a pipeline☆13Updated 9 months ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated last year