spholmes / F1000_workflowLinks
☆43Updated 8 years ago
Alternatives and similar repositories for F1000_workflow
Users that are interested in F1000_workflow are comparing it to the libraries listed below
Sorting:
- diversity estimation under ecological networks☆83Updated 3 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 months ago
- Tools for visualising microbial community amplicon data☆69Updated last week
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 9 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated last week
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Species richness with high diversity☆67Updated 2 months ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆34Updated 5 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 3 months ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Zero-Inflated Beta Random Effect model☆31Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 3 weeks ago
- functions for analyzing phyloseq data☆28Updated 8 months ago
- ☆13Updated 5 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Microbiome analysis☆53Updated this week
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 5 months ago
- Talk to the NCBI EUtils☆22Updated 5 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated last year
- R shiny app for interactive microbiome analysis☆56Updated 4 months ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago