spholmes / F1000_workflow
β43Updated 7 years ago
Alternatives and similar repositories for F1000_workflow:
Users that are interested in F1000_workflow are comparing it to the libraries listed below
- A comprehensive and customizable R package for microbiome analysis.β22Updated 2 years ago
- diversity estimation under ecological networksβ83Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research π©β30Updated last year
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USAβ35Updated 5 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVAβ35Updated 9 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.β32Updated 5 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.β27Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencingβ69Updated 3 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.β34Updated 2 years ago
- Compare different differential abundance and expression methodsβ51Updated 3 years ago
- Tools for visualising microbial community amplicon dataβ67Updated 9 months ago
- A set of R scripts for the analysis of microbial profilesβ41Updated 9 months ago
- Zero-Inflated Beta Random Effect modelβ30Updated last year
- Speedy versions of phyloseq functionsβ47Updated 10 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or tβ¦β70Updated 2 years ago
- Code used in MiCE 8992 Spring 2016β43Updated 8 years ago
- β20Updated 4 years ago
- Talk to the NCBI EUtilsβ22Updated 4 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profilesβ35Updated 11 months ago
- An R package for microbial community analysis in an environmental contextβ66Updated 4 years ago
- Microbiome analysisβ52Updated this week
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β33Updated 4 years ago
- A set of R functions that help faciliate a lot of tedious processingβ18Updated 6 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscriptβ32Updated 4 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)β38Updated last year
- β23Updated 6 years ago
- Count Regression for Correlated Observations with the Beta-binomialβ106Updated 6 months ago
- Simple R utilities for working with HMMERβ18Updated 5 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.β26Updated 6 years ago
- functions for analyzing phyloseq dataβ26Updated last month