twbattaglia / MicrobeDS
A repository for large-scale microbiome datasets, formatted for phyloseq
☆38Updated last year
Alternatives and similar repositories for MicrobeDS
Users that are interested in MicrobeDS are comparing it to the libraries listed below
Sorting:
- ☆56Updated last year
- gutSMASH☆53Updated 4 months ago
- ☆68Updated 7 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆116Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆30Updated 2 years ago
- Analyses in R and Python Using curatedMetagenomicData☆31Updated last month
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆57Updated 7 months ago
- ☆23Updated 5 years ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 6 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆62Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 5 months ago
- Batch effects removal for microbiome data via conditional quantile regression☆28Updated 2 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- repository of the 2-day course "First steps with R in Life Sciences" from SIB-training☆46Updated 3 months ago
- This is an unofficial repo for Tax4Fun2☆25Updated 3 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆32Updated 3 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- R implementation of the LEfSe method☆58Updated 3 weeks ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆42Updated this week
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆41Updated 4 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆110Updated last year
- A microbiome analysis toolkit for R☆22Updated last year
- Course material for the metagenomics course☆44Updated 3 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆38Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆36Updated 3 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆32Updated 2 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- ☆36Updated last year
- Scripts for stat and plot figures in rice microbiome paper☆31Updated 6 months ago