twbattaglia / MicrobeDSLinks
A repository for large-scale microbiome datasets, formatted for phyloseq
☆39Updated last year
Alternatives and similar repositories for MicrobeDS
Users that are interested in MicrobeDS are comparing it to the libraries listed below
Sorting:
- ☆58Updated last year
- gutSMASH☆55Updated 2 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆122Updated last year
- ☆77Updated last year
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆31Updated 5 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- ☆24Updated 5 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last week
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆59Updated 6 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆116Updated last month
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Updated 3 years ago
- Curated Metagenomic Data of the Human Microbiome☆145Updated last month
- Batch effects removal for microbiome data via conditional quantile regression☆32Updated 3 years ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆36Updated 5 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆34Updated 3 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- Analyses in R and Python Using curatedMetagenomicData☆33Updated last month
- ☆38Updated 2 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- Reduce + Visualize Gene Ontology☆35Updated 5 months ago
- Scripts for stat and plot figures in rice microbiome paper☆20Updated 6 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆151Updated 2 weeks ago
- ☆46Updated 5 years ago
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last year
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆44Updated 5 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆46Updated this week
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 6 months ago
- A companion R package for the MicrobiomeAnalyst web server☆130Updated this week
- An interactive web-tool for RNA-seq analysis☆70Updated 2 weeks ago