twbattaglia / MicrobeDSLinks
A repository for large-scale microbiome datasets, formatted for phyloseq
☆38Updated last year
Alternatives and similar repositories for MicrobeDS
Users that are interested in MicrobeDS are comparing it to the libraries listed below
Sorting:
- ☆56Updated last year
- ☆75Updated 11 months ago
- gutSMASH☆55Updated 8 months ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 9 months ago
- ☆24Updated 5 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 5 months ago
- Analysis framework for integrating gut microbiome and host gene expression data☆33Updated 3 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 3 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- A microbiome analysis toolkit for R☆24Updated 2 years ago
- Curated Metagenomic Data of the Human Microbiome☆140Updated 2 months ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆58Updated 3 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- An interactive web-tool for RNA-seq analysis☆68Updated 6 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆44Updated this week
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- Automatic RNA-Seq Pipelines with Interactive Report☆25Updated 3 months ago
- Analyses in R and Python Using curatedMetagenomicData☆31Updated 3 weeks ago
- R implementation of the LEfSe method☆59Updated 4 months ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆35Updated 4 years ago
- ☆37Updated last year
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- R package for downstream Microbiome analysis☆30Updated 9 months ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆119Updated last month
- Various bioinformatics tutorials☆61Updated last year