A repository for large-scale microbiome datasets, formatted for phyloseq
☆42Apr 8, 2024Updated 2 years ago
Alternatives and similar repositories for MicrobeDS
Users that are interested in MicrobeDS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A comprehensive and customizable R package for microbiome analysis.☆24Aug 10, 2025Updated 9 months ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- ☆79Oct 16, 2024Updated last year
- Microbiome Analysis Plotting and Visualization☆12Mar 23, 2026Updated 2 months ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- The code for running the analysis component of CSI-Microbe☆12Jan 3, 2024Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 11 months ago
- A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)☆14Apr 9, 2024Updated 2 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23May 16, 2026Updated last week
- An R package for microbial community analysis in an environmental context