R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
☆41Mar 31, 2026Updated 7 months ago
Alternatives and similar repositories for recount
Users that are interested in recount are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15May 8, 2026Updated 5 months ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆25Dec 15, 2020Updated 5 years ago
- Code and analyses from "FDR: A New Deal" paper☆15Apr 18, 2017Updated 9 years ago
- Code for the Recount project☆12Dec 13, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This python package is for transitioning bioconductor from SVN to git☆14Mar 15, 2023Updated 3 years ago
- Python scripts for data processing and analysis of P100 and GCP data☆10Dec 23, 2020Updated 5 years ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆13Apr 17, 2026Updated 6 months ago
- Exon-exon splice junctions across SRA☆43Jul 30, 2021Updated 5 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆49Jun 21, 2022Updated 4 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis☆22Feb 14, 2024Updated 2 years ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- ☆11Jun 23, 2026Updated 4 months ago
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆47Aug 28, 2026Updated 2 months ago
- Breakpointer is a fast algorithm to locate breakpoints of structural variants from single-end reads produced by next-generation sequencin…☆10May 2, 2014Updated 12 years ago
- Examples of kallisto + sleuth☆11May 18, 2017Updated 9 years ago
- Source code of the Bgee pipeline used to build the Bgee database☆12Updated this week
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆23Apr 30, 2026Updated 6 months ago
- A comprehensive and customizable R package for microbiome analysis.☆24Sep 6, 2026Updated last month
- Low-level Python interface to Sun Grid Engine☆19Jul 21, 2012Updated 14 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 11 years ago
- Advanced R programming course at EMBL, 3-4 April 2017☆11Apr 5, 2017Updated 9 years ago
- ☆149May 14, 2018Updated 8 years ago
- Project Website:☆52Oct 22, 2026Updated last week
- package for analysis of ligand and receptor connectivity between populations in scRNA-seq data☆13May 20, 2022Updated 4 years ago
- ☆20May 20, 2021Updated 5 years ago
- Regression with summary statistics (RSS) package for R.☆10Oct 29, 2020Updated 6 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 3 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆44Mar 3, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Oct 28, 2022Updated 4 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆25Apr 25, 2023Updated 3 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆20Feb 9, 2022Updated 4 years ago
- Scalable RNA-seq analysis☆73Jan 12, 2021Updated 5 years ago
- R package for Empirical Bayes Factor Analysis.☆55Dec 4, 2024Updated last year