An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. π΅
β28Apr 13, 2026Updated 2 weeks ago
Alternatives and similar repositories for OrthoEvolution
Users that are interested in OrthoEvolution are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lab notebook for people who like the command line.β11Mar 6, 2026Updated last month
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).β15May 9, 2019Updated 6 years ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.β26Apr 30, 2018Updated 8 years ago
- β28Oct 5, 2018Updated 7 years ago
- Gene expression viewer templateβ12Aug 30, 2017Updated 8 years ago
- Open source password manager - Proton Pass β’ AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Find nodes in hierarchical clustering that are statistically significantβ32Oct 15, 2017Updated 8 years ago
- Genome alignment and synteny plotsβ34Mar 24, 2026Updated last month
- A server for maintaining high-throughput sequencing QC dataβ13Aug 5, 2025Updated 8 months ago
- A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysisβ21Feb 14, 2024Updated 2 years ago
- A project to develop the R Shiny applications.β12May 13, 2019Updated 6 years ago
- Python3 module for running MUMmer and reading the outputβ34Mar 24, 2025Updated last year
- Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree filesβ129Dec 6, 2021Updated 4 years ago
- An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.β17Dec 21, 2024Updated last year
- Allele frequency filter appβ14May 4, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A comprehensive and customizable R package for microbiome analysis.β24Aug 10, 2025Updated 8 months ago
- π― Generate DNA sequences with specified amino acid, codon, and k-mer frequenciesβ17Jan 23, 2023Updated 3 years ago
- Genome wide orthology inference and dNdS estimationβ101Mar 25, 2026Updated last month
- Non-parametric structural variant genotyperβ15Nov 18, 2021Updated 4 years ago
- Python3 wrapper for GATB-Core.β10Dec 16, 2017Updated 8 years ago
- CGM δΈ»η«β11Mar 10, 2025Updated last year
- NCBI-BLAST web service with python backend and HTML5 frontend.β21Oct 26, 2016Updated 9 years ago
- Reproducible Workflows, curated at the Fred Hutchβ12Jan 21, 2026Updated 3 months ago
- PaNeV: an R package for a pathway-based network visualizationβ10Aug 25, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Copy number estimation of highly duplicated sequencesβ10Aug 15, 2017Updated 8 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomesβ10Oct 16, 2024Updated last year
- Seamless navigation through combined results of set-based and network-based enrichment analysisβ22Updated this week
- Python module and utility programs for working with GFF filesβ33Nov 25, 2020Updated 5 years ago
- Readmeβ10Mar 15, 2020Updated 6 years ago
- Launch a distributed R server on a cluster from a remote R sessionβ12Apr 23, 2022Updated 4 years ago
- β26Feb 24, 2026Updated 2 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshopβ18Feb 12, 2016Updated 10 years ago
- Explore the cancer relevance of your gene listβ54Dec 17, 2025Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package for annotating metagenomic datasets with taxonomic informationβ10Feb 11, 2020Updated 6 years ago
- Probabilistic Inference of Molecular Evolutionβ10Sep 6, 2021Updated 4 years ago
- D3 based visualisation for comparative genomicsβ15Oct 6, 2016Updated 9 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BELβ13Feb 11, 2022Updated 4 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.β31Mar 28, 2019Updated 7 years ago
- Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"β15Sep 10, 2018Updated 7 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix toolsβ50Jun 27, 2020Updated 5 years ago